Tag: Human

VarioWatch 20171116 – Providing large-scale and comprehensive Annotations on human Genomic Variants in the Next Generation Sequencing era

VarioWatch 20171116

:: DESCRIPTION

VarioWatch is a functional variant and disease gene mining browser for association study

::DEVELOPER

VarioWatch team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W76-81. doi: 10.1093/nar/gks397. Epub 2012 May 22.
VarioWatch: providing large-scale and comprehensive annotations on human genomic variants in the next generation sequencing era.
Cheng YC1, Hsiao FC, Yeh EC, Lin WJ, Tang CY, Tseng HC, Wu HT, Liu CK, Chen CC, Chen YT, Yao A.

HIVE Genecast 0.3.0 – Human Gene Variation Information for Mobile Devices

HIVE Genecast 0.3.0

:: DESCRIPTION

HIVE Genecast enables users to browse human disease associated single nucleotide variations (SNVs). This will allow researchers to quickly look up mutation data on-the-go as well as view graphical analytics.

::DEVELOPER

High-performance Integrated Virtual Environment (HIVE)

:: SCREENSHOTS

HiveGenecast

:: REQUIREMENTS

  • Android

:: DOWNLOAD

 HIVE Genecast

:: MORE INFORMATION

ACEScan 1.0 – Prediction of Conserved Alternatively Spliced Exons from pairs of Conserved Mouse/Human Exons

ACEScan 1.0

:: DESCRIPTION

ACEScan is a webtool of identification and analysis of alternative splicing events conserved in human and mouse.

::DEVELOPER

Christopher Burge Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Yeo, G., Van Nostrand, E., Holste, D., Poggio, T. and Burge, C. B. (2005).
Identification and analysis of alternative splicing events conserved in human and mouse.
Proc. Natl. Acad. Sci. USA 102, 2850-2855

ApoCanD – Database of Human Apoptotic Proteins in the Context of Cancer

ApoCanD

:: DESCRIPTION

ApoCanD is a database comprises of crucial information of apoptosis proteins in the context of cancer.This database will facilitate the research community working in the field of apoptosis and cancer.

::DEVELOPER

ApoCanD team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

ApoCanD: Database of human apoptotic proteins in the context of cancer.
Kumar R, Raghava GP.
Sci Rep. 2016 Feb 10;6:20797. doi: 10.1038/srep20797.

HumCFS – A Database Of Human Chromosomal Fragile Sites

HumCFS

:: DESCRIPTION

HumCFS is a manually curated database of human chromosomal fragile sites. HumCFS provides useful information about 125 human chromosomal fragile sites and their association with 4921 human protein-coding genes and 917 human miRNA’s.

::DEVELOPER

HumCFS team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

  NO

:: MORE INFORMATION

Citation

HumCFS: a database of fragile sites in human chromosomes.
Kumar R, Nagpal G, Kumar V, Usmani SS, Agrawal P, Raghava GPS.
BMC Genomics. 2019 Apr 18;19(Suppl 9):985. doi: 10.1186/s12864-018-5330-5.

PHDcleav – Prediction of Human Dicer Cleavage

PHDcleav

:: DESCRIPTION

PHDcleav is a webserver to predict Dicer cleavage sites in pre-miRNA. Dicer, an RNase III enzyme, plays vital role in RNA interference pathway, processes both pre-miRNAs (precursor microRNAs) and double-stranded (ds) RNAs to generate effector molecules. Thus it is very important to know true Dicer processing sites in the pre-miRNA molecules to understand the RNA interference pathway.

::DEVELOPER

PHDcleav team 

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2013;14 Suppl 14:S9. doi: 10.1186/1471-2105-14-S14-S9. Epub 2013 Oct 9.
PHDcleav: a SVM based method for predicting human Dicer cleavage sites using sequence and secondary structure of miRNA precursors.
Ahmed F, Kaundal R, Raghava GP.

seeQTL – A Searchable Human eQTL Browser and database

seeQTL

:: DESCRIPTION

seeQTL is a comprehensive and versatile eQTL database, including various eQTL studies and a meta-analysis of HapMap eQTL information. The database presents eQTL association results in a convenient browser, using both segmented local-association plots and genome-wide Manhattan plots.

::DEVELOPER

Department of Biostatistics, Computer Sciences and Genetics, University of North Carolina at Chapel Hill

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web  Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation:

K. Xia, A.A. Shabalin, S. Huang, V. Madar, Y.H. Zhou, W. Wang, F. Zou, W. Sun, P.F. Sullivan, and F.A. Wright
seeQTL: A searchable database for human eQTLs
Bioinformatics (2012) 28(3): 451-452

BioLegend CD Posters 1.4 / BioLegend Tools for iPad 1.4 – Information about Mouse and Human CD Molecules

BioLegend CD Posters 1.4 / BioLegend Tools for iPad 1.4

:: DESCRIPTION

BioLegend CD Posters / BioLegend Tools for iPad provides you with important information about your mouse and human CD Molecules, Cytokines and Chemokines.

BioLegend Tools for iPad also includes BioLegend pathway posters, an antibody usage calculator, and a lab timer. What’s more it is optimized for the iPad for speed and clarity.

::DEVELOPER

BioLegend

:: SCREENSHOTS

bcp

:: REQUIREMENTS

  • iPhone /  iPad

:: DOWNLOAD

 BioLegend CD Posters / BioLegend Tools for iPad

:: MORE INFORMATION

CHuM – Cis-acting Human Mutation

CHuM

:: DESCRIPTION

CHuM is a computational discrimination strategy for regulatory polymorphisms in the upstream non-coding regions.

::DEVELOPER

 the laboratory of Stephen B. Montgomery

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / MacOsX
  • Perl

:: DOWNLOAD

  CHuM

:: MORE INFORMATION

Citation

Montgomery S.B., Griffith O.L., Schuetz J.M., Brooks-Wilson, A., Jones S.J.M.
“A Computational Discrimination Strategy For Regulatory Polymorphisms In The Upstream Non-Coding Regions of Homo Sapiens”
(Submitted).

 

PhD-SNP 2.0.6 – Predictor of human Deleterious Single Nucleotide Polymorphisms

PhD-SNP 2.0.6

:: DESCRIPTION

PhD-SNP supports Vector Machine based method to discriminate between neutral or disease-related single point protein mutations.

::DEVELOPER

the Structural Bioinformatics Unit

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Mac / Windows
  • Python

:: DOWNLOAD

 PhD-SNP

:: MORE INFORMATION

Citation

Bioinformatics. 2006 Nov 15;22(22):2729-34. Epub 2006 Aug 7.
Predicting the insurgence of human genetic diseases associated to single point protein mutations with support vector machines and evolutionary information.
Capriotti E, Calabrese R, Casadio R.