:: DESCRIPTION
GGD-Lasso (Graph-regularized Dual Lasso) is a robust approach for eQTL mapping.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2014 Jun 15;30(12):i139-i148. doi: 10.1093/bioinformatics/btu293.
Graph-regularized dual Lasso for robust eQTL mapping.
Cheng W, Zhang X, Guo Z, Shi Y, Wang W.
:: DESCRIPTION
EPSILON is an extendable framework for eQTL prioritization, which mitigates the effect of highly connected genes and unreliable interactions by constructing a local network before a network-based similarity measure is applied to select the true causal gene.
::DEVELOPER
Lieven P.C. Verbeke lieven.verbeke@intec.ugent.be or jan.fostier@intec.ugent.be
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Lieven P. C. Verbeke; Lore Cloots; Piet Demeester; Jan Fostier; Kathleen Marchal
EPSILON: an eQTL prioritization framework using similarity measures derived from local networks
Bioinformatics (2013) 29 (10): 1308-1316.
:: DESCRIPTION
TreeQTL implements a hierarchical multiple testing procedure which allows control of appropriate error rates defined relative to a grouping of the eQTL hypotheses.
::DEVELOPER
Christine B. Peterson (cbpeterson@gmail.com)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Peterson CB, Bogomolov M, Benjamini Y, Sabatti C.
TreeQTL: hierarchical error control for eQTL findings.
Bioinformatics. 2016 Aug 15;32(16):2556-8. doi: 10.1093/bioinformatics/btw198. Epub 2016 Apr 19. PMID: 27153635; PMCID: PMC4978936.
:: DESCRIPTION
seeQTL is a comprehensive and versatile eQTL database, including various eQTL studies and a meta-analysis of HapMap eQTL information. The database presents eQTL association results in a convenient browser, using both segmented local-association plots and genome-wide Manhattan plots.
::DEVELOPER
Department of Biostatistics, Computer Sciences and Genetics, University of North Carolina at Chapel Hill
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation:
K. Xia, A.A. Shabalin, S. Huang, V. Madar, Y.H. Zhou, W. Wang, F. Zou, W. Sun, P.F. Sullivan, and F.A. Wright
seeQTL: A searchable database for human eQTLs
Bioinformatics (2012) 28(3): 451-452
:: DESCRIPTION
eQTLexplorer is an eqtl visualization tool that allows users to mine and understand data from a repository of genetical genomics experiments.
::DEVELOPER
Michael Mueller, Jon Mangion
:: SCREENSHOTS
::REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Mueller M et al. (2006)
eQTLexplorer: integrated mining of genetical genomics experiments.
Bioinformatics, 22: 509-11
