PoseView 1.1.2 – Creates Two-dimensional Diagrams of Complexes with known Complex Structure

PoseView 1.1.2

:: DESCRIPTION

The PoseView automatically creates two-dimensional diagrams of complexes with known 3D structure according to chemical drawing conventions.

::DEVELOPER

Center for Bioinformatics (ZBH), University of Hamburg

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux/Windows

:: DOWNLOAD

 PoseView

:: MORE INFORMATION

Citation

Bioinformatics. 2006 Jul 15;22(14):1710-6. Epub 2006 Apr 21.
Molecular complexes at a glance: automated generation of two-dimensional complex diagrams.
Stierand K1, Maass PC, Rarey M.

pDRAW32 1.1.144 – DNA Analysis Software

pDRAW32 1.1.144

:: DESCRIPTION

pDRAW32 is a scientific software for the molecular biologist. Performs virtual DNA cloning, analyses DNA for restriction enzymes, homing enzymes and primer sites, dam and dcm methylation sites, finds and translates open reading frames. Calculates annealing temperatures for PCR. Generates DNA/plasmid plots, virtual agarose gel plots, XY-homology plots – and more!

::DEVELOPER

AcaClone Software

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

pDRAW32

:: MORE INFORMATION

BKChem 0.14.0-pre2 – Free Chemical Drawing Program

BKChem 0.14.0-pre2

:: DESCRIPTION

BKChem is a free chemical drawing program.

::DEVELOPER

written by Beda Kosata ,  currently maintained by Reinis Danne.

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

BKChem

:: MORE INFORMATION

BKChem is free software.

OGdraw 1.3.1 – Generate high-quality Graphical Maps of circular DNA Sequences

OGdraw 1.3.1

:: DESCRIPTION

OGDraw (OrganelleGenomeDraw) is a tool that enables the user to quickly generate high-quality graphical maps of circular DNA sequences. Though especially designed and optimized for the display of small organelle genomes like the chloroplast or mitochondrial genome, it is applicable to all circular DNA sequences. The input data can be provided as GenBank files or GenBank accession numbers.

::DEVELOPER

Max Planck Institute for Molecular Plant Physiology

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/MacOsX/Windows
  • Perl

:: DOWNLOAD

 OGdraw

:: MORE INFORMATION

Citation
Nucleic Acids Res, 47 (W1), W59-W64 2019 Jul 2
OrganellarGenomeDRAW (OGDRAW) Version 1.3.1: Expanded Toolkit for the Graphical Visualization of Organellar Genomes
Stephan Greiner , Pascal Lehwark , Ralph Bock

Curr Genet. 2007 Nov;52(5-6):267-74. Epub 2007 Oct 24.
OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes.
Lohse M, Drechsel O, Bock R.

WebChem Viewer 1.2.7 – Sharing Molecular Structures and Associated Chemical Information

WebChem Viewer 1.2.7

:: DESCRIPTION

WebChem Viewer is a simple, free, open-source program that generates HTML-formatted output that can be viewed in any modern web browser, on any operating system (including mobile), without requiring the installation of additional software. The output can also be easily incorporated into existing web pages.

::DEVELOPER

Durrant Lab

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • Python

:: DOWNLOAD

 WebChem Viewer 

:: MORE INFORMATION

KegDraw 0.1.15 beta – Draw Compound & Glycan Structures

KegDraw 0.1.15 beta

:: DESCRIPTION

KegDraw is a java application for drawing compound and glycan structures with capabilities to search against the KEGG databases.

::DEVELOPER

Kanehisa Laboratories

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Mac /  Linux
  • Java

:: DOWNLOAD

KegDraw

:: MORE INFORMATION

Citation

Glycobiology. 2006 May;16(5):63R-70R. Epub 2005 Jul 13.
KEGG as a glycome informatics resource.
Hashimoto K, Goto S, Kawano S, Aoki-Kinoshita KF, Ueda N, Hamajima M, Kawasaki T, Kanehisa M.

Marvin 16.5.2.0 – Draw & Visualize Chemistry

Marvin 16.5.2.0

:: DESCRIPTION

Marvin is a collection of tools for drawing, displaying and characterizing chemical structures, substructures and reactions.

::DEVELOPER

ChemAxon Ltd.

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Linux / Mac OsX
  • Java

:: DOWNLOAD

Marvin

:: MORE INFORMATION

SnapGene Viewer 3.1.2 – Create, Browse, and Share richly Annotated DNA Sequence

 SnapGene Viewer 3.1.2

:: DESCRIPTION

SnapGene Viewer is revolutionary software that allows molecular biologists to create, browse, and share richly annotated DNA sequence files up to 1 Gb in length.

::DEVELOPER

Biotech LLC

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / MacOSX

:: DOWNLOAD

 SnapGene Viewer

:: MORE INFORMATION