RNAfamily is a simple software tools that enables to display all secondary structures of a family of RNA molecules. It uses the linear backbone representation. RNAfamily provides usual graphical features: zooming, scrolling, etc. Colors of the stems correspond to matching stems. It is also possible to display the nucleotides composing a stem or the whole sequence.
By playing EteRNA, you will participate in creating the first large-scale library of synthetic RNA designs. Your efforts will help reveal new principles for designing RNA-based switches and nanomachines — new systems for seeking and eventually controlling living cells and disease-causing viruses. By interacting with thousands of players and learning from real experimental feedback, you will be pioneering a completely new way to do science.
In NOVA RNA VirtuaLab you’ll play the role of a molecular engineer by solving RNA folding puzzles. Then take your skills to Eterna, where you can design RNAs that could be at the heart of future life-saving therapies.
HelixMC is a software package for Monte-Carlo (MC) simulations of DNA/RNA helices using the base-pair level model. It provides a powerful tool to understand the flexibility of DNA/RNA helices through numerical simualtions.
rna-dm (RNA Dynamic Miner) is a C++ program that can generate the profile of minimum or optimal free energy landscape for a given partial or complete RNA sequence. It also can process a data set of large RNA sequences in a high-throughput fashion.