Tag: Single Nucleotide Polymorphisms

2kplus2 0.1 – Find Single Nucleotide Polymorphisms in K-mer graphs

2kplus2 0.1

:: DESCRIPTION

2kplus2 is a new algorithm that search graphs produced from the de novo assembler cortex.

::DEVELOPER

Dan MacLean

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C ++ Compiler

:: DOWNLOAD

 2kplus2

:: MORE INFORMATION

Citation

Using 2k + 2 bubble searches to find Single Nucleotide Polymorphisms in k-mer graphs.
Younsi R, MacLean D.
Bioinformatics. 2014 Oct 24. pii: btu706.

PhD-SNP 2.0.6 – Predictor of human Deleterious Single Nucleotide Polymorphisms

PhD-SNP 2.0.6

:: DESCRIPTION

PhD-SNP supports Vector Machine based method to discriminate between neutral or disease-related single point protein mutations.

::DEVELOPER

the Structural Bioinformatics Unit

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Mac / Windows
  • Python

:: DOWNLOAD

 PhD-SNP

:: MORE INFORMATION

Citation

Bioinformatics. 2006 Nov 15;22(22):2729-34. Epub 2006 Aug 7.
Predicting the insurgence of human genetic diseases associated to single point protein mutations with support vector machines and evolutionary information.
Capriotti E, Calabrese R, Casadio R.