CellFinder 1.5.1 – Study Annotations, Bibliography, Gene and Protein Expression in Stem Cells and Derivatives

CellFinder 1.5.1

:: DESCRIPTION

CellFinder maps validated gene and protein expression, phenotype and images related to cell types. The data allow characterization and comparison of cell types and can be browsed by using the body browser and by searching for cells or genes. All cells are related to more complex systems such as tissues, organs and organisms and arranged according to their position in development.

::DEVELOPER

Computational Biology and Data Mining (CBDM) Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2014 Jan;42(Database issue):D950-8. doi: 10.1093/nar/gkt1264. Epub 2013 Dec 3.
CellFinder: a cell data repository.
Stachelscheid H1, Seltmann S, Lekschas F, Fontaine JF, Mah N, Neves M, Andrade-Navarro MA, Leser U, Kurtz A.

VarioWatch 20171116 – Providing large-scale and comprehensive Annotations on human Genomic Variants in the Next Generation Sequencing era

VarioWatch 20171116

:: DESCRIPTION

VarioWatch is a functional variant and disease gene mining browser for association study

::DEVELOPER

VarioWatch team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W76-81. doi: 10.1093/nar/gks397. Epub 2012 May 22.
VarioWatch: providing large-scale and comprehensive annotations on human genomic variants in the next generation sequencing era.
Cheng YC1, Hsiao FC, Yeh EC, Lin WJ, Tang CY, Tseng HC, Wu HT, Liu CK, Chen CC, Chen YT, Yao A.

TAM – Annotations of meaningful human miRNAs Categories

TAM

:: DESCRIPTION

TAM (The tool for annotations of human miRNAs) integrated miRNAs into different sets according to various rules and provides investigators with functions to mine potential biological meaning behind list of interested miRNAs.

::DEVELOPER

the Cui Lab

:: SCREENSHOTS

n/a

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

 TAM

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2010 Aug 9;11:419. doi: 10.1186/1471-2105-11-419.
TAM: a method for enrichment and depletion analysis of a microRNA category in a list of microRNAs.
Lu M1, Shi B, Wang J, Cao Q, Cui Q.

ADGO 2.0 – Interpreting Microarray data and list of Genes using Composite Annotations

ADGO 2.0

:: DESCRIPTION

ADGO provides biological interpretations for microarray data and list of genes (or proteins) via composite annotations

::DEVELOPER

ADGO team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W302-6. doi: 10.1093/nar/gkr392. Epub 2011 May 29.
ADGO 2.0: interpreting microarray data and list of genes using composite annotations.
Chi SM1, Kim J, Kim SY, Nam D.