:: DESCRIPTION
BLOSpectrum is a software of splitting the BLOSUM score into numbers of biological significance.
::DEVELOPER
Bioinfor lab, Dipartimento di Matematica e Informatica, Università degli Studi di Trieste
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Splitting the BLOSUM score into numbers of biological significance.
Fabris F, Sgarro A, Tossi A.
EURASIP J Bioinform Syst Biol. 2007:31450.
:: DESCRIPTION
PRISM is a software for split read (reads which span across a structrual variant — SV ) mapping and SV calling from the mapping result. PRISM is able to detect small insertions and abitrary size deletions, inversions and tandom duplications with the direction of discordant read pairs.
PRISM_CTX is a tool for detecting inter-chromosome trans-location events.
::DEVELOPER
Computational Biology Lab, University of Toronto
:: SCREENSHOTS
N/A
::REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2012 Oct 15;28(20):2576-83. doi: 10.1093/bioinformatics/bts484. Epub 2012 Jul 31.
PRISM: pair-read informed split-read mapping for base-pair level detection of insertion, deletion and structural variants.
Jiang Y1, Wang Y, Brudno M.
:: DESCRIPTION
Split fasta file into smaller segments. This is useful if you have a large FASTA file that needs to be split into smaller files.
::DEVELOPER
CABM Structural Bioinformatics Laboratory
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
The SBT (Sequence Bloom Tree) is a method that will allow you to index a set of short-read sequencing experiments and then query them quickly for a given sequence
SSBT is a method that will allow you to index a set of short-read sequencing experiments and then query them quickly for a given sequence.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Brad Solomon, Carl Kingsford (2016).
Fast search of thousands of short-read sequencing experiments.
Nature Biotechnology 34:300-302.
J Comput Biol. 2018 Jul;25(7):755-765. doi: 10.1089/cmb.2017.0265. Epub 2018 Mar 12.
Improved Search of Large Transcriptomic Sequencing Databases Using Split Sequence Bloom Trees.
Solomon B, Kingsford C
:: DESCRIPTION
SPLITLOC is to split a basic dataset for JoinMap version 2.0 into separate files for the construction of linkage maps of individual chromosomes. The second and more important aim of this computer program is to RECODE the data (written according to the input file format for the option CP (=cross pollinators)) into separate datasets for the construction of maternal, paternal and integrated linkage groups of individual chromosomes.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
