PRISM 1.1.6 / PRISM_CTX 1.0.1 – Pair Read Informed Split Mapper

PRISM 1.1.6 / PRISM_CTX 1.0.1

:: DESCRIPTION

PRISM is a software for split read (reads which span across a structrual variant — SV ) mapping and SV calling from the mapping result. PRISM is able to detect small insertions and abitrary size deletions, inversions and tandom duplications with the direction of discordant read pairs.

PRISM_CTX is a tool for detecting inter-chromosome trans-location events.

::DEVELOPER

Computational Biology Lab, University of Toronto

:: SCREENSHOTS

N/A

::REQUIREMENTS

Linux

:: DOWNLOAD

PRISM / PRISM_CTX

:: MORE INFORMATION

Citation

Bioinformatics. 2012 Oct 15;28(20):2576-83. doi: 10.1093/bioinformatics/bts484. Epub 2012 Jul 31.
PRISM: pair-read informed split-read mapping for base-pair level detection of insertion, deletion and structural variants.
Jiang Y1, Wang Y, Brudno M.

PRISM 2.0 – Prediction of Protein-protein Interactions and Modeling their 3D Complexes

PRISM 2.0

:: DESCRIPTION

The PRISM web server enables fast and accurate prediction of protein-protein interactions (PPIs).

::DEVELOPER

the COSBI (Computational Systems Biology) group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux
Python

:: DOWNLOAD

PRISM PROTOCOL

:: MORE INFORMATION

Citation

Baspinar A, Cukuroglu E, Nussinov R, Keskin O, Gursoy A.
PRISM: A web server and repository for prediction of protein-protein interactions and modeling their 3D complexes.
Nucl. Acids Res. (2014) doi: 10.1093/nar/gku397

PriSM – Primer Selection and Matching for Amplification of Viral Genomes

PriSM

:: DESCRIPTION

PriSM is a set of algorithms designed specifically to create degenerate primers for the amplification and sequencing of short viral genomes while maintaining sample population diversity.

::DEVELOPER

Computational R&D, The Broad Institute, Cambridge, MA

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Yu Q, Ryan EM, Allen TM, Birren BW, Henn MR, Lennon NJ (2011)
PriSM: a primer selection and matching tool for amplification and sequencing of viral genomes.
Bioinformatics 27(2): 266-267.

PrISM – Protein Informatics System for Modeling

PrISM

:: DESCRIPTION

PrISM (Protein Informatics System for Modeling) is an integrated computational system where computational tools are implemented for protein sequence and structure analysis and modeling.

::DEVELOPER

Barry Honig’s group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

PrISM

:: MORE INFORMATION

Citation

Proteins. 1999;Suppl 3:66-72.
Sequence to structure alignment in comparative modeling using PrISM.
Yang AS, Honig B.