PRISM 1.1.6 / PRISM_CTX 1.0.1

:: DESCRIPTION

PRISM is a software for split read (reads which span across a structrual variant — SV ) mapping and SV calling from the mapping result. PRISM is able to detect small insertions and abitrary size deletions, inversions and tandom duplications with the direction of discordant read pairs.

PRISM_CTX is a tool for detecting inter-chromosome trans-location events.

::DEVELOPER

Computational Biology Lab, University of Toronto

:: SCREENSHOTS

N/A

::REQUIREMENTS

• Linux

:: DOWNLOAD

 PRISM / PRISM_CTX

:: MORE INFORMATION

Citation

Bioinformatics. 2012 Oct 15;28(20):2576-83. doi: 10.1093/bioinformatics/bts484. Epub 2012 Jul 31.
PRISM: pair-read informed split-read mapping for base-pair level detection of insertion, deletion and structural variants.
Jiang Y1, Wang Y, Brudno M.