:: DESCRIPTION
nxtrim: Software to remove Nextera Mate Pair adapters and categorise reads according to the orientation implied by the adapter location.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
NxTrim: optimized trimming of Illumina mate pair reads.
O’Connell J, Schulz-Trieglaff O, Carlson E, Hims MM, Gormley NA, Cox AJ.
Bioinformatics. 2015 Feb 5. pii: btv057
:: DESCRIPTION
PRISM is a software for split read (reads which span across a structrual variant — SV ) mapping and SV calling from the mapping result. PRISM is able to detect small insertions and abitrary size deletions, inversions and tandom duplications with the direction of discordant read pairs.
PRISM_CTX is a tool for detecting inter-chromosome trans-location events.
::DEVELOPER
Computational Biology Lab, University of Toronto
:: SCREENSHOTS
N/A
::REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2012 Oct 15;28(20):2576-83. doi: 10.1093/bioinformatics/bts484. Epub 2012 Jul 31.
PRISM: pair-read informed split-read mapping for base-pair level detection of insertion, deletion and structural variants.
Jiang Y1, Wang Y, Brudno M.
