:: DESCRIPTION
Split fasta file into smaller segments. This is useful if you have a large FASTA file that needs to be split into smaller files.
::DEVELOPER
CABM Structural Bioinformatics Laboratory
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
Fasta File Comparer compares protein sequences from two different Fasta files and outputs the matching proteins and sequences to a text file.
::DEVELOPER
Matthew Monroe @ Biological MS Data and Software Distribution Center , Pacific Northwest National Laboratory
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
FASTA Unscramble Record Order sorts one FASTA file according to the deflines of another. It unscrambles FASTA record order scrambled by, e.g., a multiple-sequence alignment program. It can also alphabetize FASTA records by their deflines.
::DEVELOPER
Statistical Computational Biology Group
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
FASTA Unique Sequences uniques the sequences in a FASTA file. It concatenates deflines that share sequences. It can also reverse the concatenation.
::DEVELOPER
Statistical Computational Biology Group
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
FASTA Length finds the lengths of sequences in a FASTA file.
::DEVELOPER
Statistical Computational Biology Group
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
FASTA Canonical Sequences deletes comments from FASTA files. It can also change sequences by deleting specified characters or whitespace, introduce newlines for readibility, or change sequence case.
::DEVELOPER
Statistical Computational Biology Group
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
Fasta reader is designed to be helpful when reading in fasta files or when trying to index them in a smarter fashion for quick subsequence lookup. This library was mainly created for the second reason, but was meant to be compatible with also regular fasta text files for sub-sequence retrieval. It supports MFA in as far as it is possible.
::DEVELOPER
:: SCREENSHOTS
N/A
::REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
PatScan (scan_for_matches) is a pattern matcher which searches protein or nucleotide (DNA, RNA, tRNA etc.) sequence archives for instances of a pattern which you input.
::DEVELOPER
Ross Overbeek (overbeek@mcs.anl.gov); David Joerg and Morgan Price
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
fasta2pfam.pl converts a fasta file to pfam format for use with quickdist
::DEVELOPER
Susan Huse, shuse@mbl.edu
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
cdbfasta/cdbyank: fast indexing/retrieval of fasta records from flat file databases. These two utilities are based on the “cdb” (Constant DataBase) concept and the file-based hashing algorithm developed by D.J. Bernstein
::DEVELOPER
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
