:: DESCRIPTION
SWeBLAST (Sliding Window Web-based BLAST) is a perl program that looks for recombinations in non-aligned sequences using BLAST.
::DEVELOPER
SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Fourment M, Gibbs AJ, Gibbs MJ.
SWeBLAST: a Sliding Window Web-based BLAST tool for recombinant analysis.
J Virol Methods. 2008, 152, 98-101
:: DESCRIPTION
BioParishodhana integrates tools for similarity search, primer designing, and restriction enzyme digestion are required in almost all biological research.
::DEVELOPER
Institute of Bioinformatics and Applied Biotechnology, Bangalore, India,
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
Vangala RK, Singh L, Gupta RP.
BioParishodhana: A novel graphical interface integrating BLAST, ClustalW, primer3 and restriction digestion tools.
Bioinformation. 2012;8(13):639-43. doi: 10.6026/97320630008639. Epub 2012 Jul 6. PMID: 22829746; PMCID: PMC3400990.
:: DESCRIPTION
DIAMOND is a sequence aligner for protein and translated DNA searches, designed for high performance analysis of big sequence data.
AC-DIAMOND attempts to speed up DIAMOND via better SIMD parallelization and compressed indexing.
::DEVELOPER
the Algorithms in Bioinformatics lab. / Huijun Mai
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Buchfink B, Xie C, Huson DH.
Fast and sensitive protein alignment using DIAMOND.
Nat Methods. 2015 Jan;12(1):59-60. doi: 10.1038/nmeth.3176. Epub 2014 Nov 17. PMID: 25402007.
Mai H, Zhang Y, Li D, Leung HC, Luo R, Wong CK, Ting HF, Lam TW.
AC-DIAMOND v1: accelerating large-scale DNA-protein alignment.
Bioinformatics. 2018 Nov 1;34(21):3744-3746. doi: 10.1093/bioinformatics/bty391. PMID: 29771282.
:: DESCRIPTION
MPBLAST is a software that increases the throughput of batch BLASTN searches by multiplexing (concatenating) query sequences and thereby reducing the number of actual database searches performed.
::DEVELOPER
Korf Lab at the University of California, Davis.
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2000 Nov;16(11):1052-3.
MPBLAST : improved BLAST performance with multiplexed queries.
Korf I, Gish W.
:: DESCRIPTION
MSBLAST is a specialised BLAST –based protocol developed for identification of proteins by sequence similarity searches using peptide sequences produced by the interpretation of tandem mass spectra.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
Anal Chem. 2001 May 1;73(9):1917-26.
Charting the proteomes of organisms with unsequenced genomes by MALDI-quadrupole time-of-flight mass spectrometry and BLAST homology searching.
Shevchenko A, Sunyaev S, Loboda A, Shevchenko A, Bork P, Ens W, Standing KG.
:: DESCRIPTION
Kablammo helps you create interactive visualizations of BLAST results from your web browser. Find your most interesting alignments, list detailed parameters for each, and export a publication-ready vector image, all without installing any software.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Kablammo: an interactive, web-based BLAST results visualizer.
Wintersinger JA, Wasmuth JD.
Bioinformatics. 2014 Dec 5. pii: btu808.
:: DESCRIPTION
BLASTPLOT is a simple to use PERL module that allows the generation of PNG graphs for all the reference sequences associated with a BLAST result set.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Source Code Biol Med. 2014 Mar 31;9(1):7. doi: 10.1186/1751-0473-9-7.
BLASTPLOT: a PERL module to plot next generation sequencing NCBI-BLAST results.
Herrera-Galeano JE1, Frey KG, Cer RZ, Mateczun AJ, Bishop-Lilly KA, Mokashi VP.
:: DESCRIPTION
MapMyFlu is a blast-server for influenza sequences (protein or DNA) which displays the top hits using Google Maps in a spatial and temporal fashion.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
MapMyFlu: visualizing spatio-temporal relationships between related influenza sequences.
Nolte N, Kurzawa N, Eils R, Herrmann C.
Nucleic Acids Res. 2015 May 4. pii: gkv417.
:: DESCRIPTION
BLAST (Basic Local Alignment Search Tool) finds regions of local similarity between sequences. The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance of matches. BLAST can be used to infer functional and evolutionary relationships between sequences as well as help identify members of gene families.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
BLAST is public domain software.
Citation:
Altschul, S.F., Gish, W., Miller, W., Myers, E.W. & Lipman, D.J. (1990) “Basic local alignment search tool.” J. Mol. Biol. 215:403-410. PubMed