SWeBLAST – Look for Recombinations in non-aligned Sequences using BLAST

SWeBLAST

:: DESCRIPTION

SWeBLAST (Sliding Window Web-based BLAST) is a perl program that looks for recombinations in non-aligned sequences using BLAST.

::DEVELOPER

Mathieu Fourment

 SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • Perl

:: DOWNLOAD

 SWeBLAST

:: MORE INFORMATION

Citation

Fourment M, Gibbs AJ, Gibbs MJ.
SWeBLAST: a Sliding Window Web-based BLAST tool for recombinant analysis.
J Virol Methods. 2008, 152, 98-101

Protein Sequence Motif Extractor 1.0.4752 – Look for the specified Motif in each Protein Sequence

Protein Sequence Motif Extractor 1.0.4752

:: DESCRIPTION

The Protein Sequence Motif Extractor reads a fasta file or tab delimited file containing protein sequences, then looks for the specified motif in each protein sequence. Results are stored in a new file containing the regions of the protein that contain the specified motif. The default output format is a new fasta file named _Motifs.fasta, but you can alternatively use /T to specify that a tab-delimited text file be created.

::DEVELOPER

Biological MS Data and Software Distribution Center , Pacific Northwest National Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows
  • Microsoft NET Framework 4.0

:: DOWNLOAD

   Protein Sequence Motif Extractor

:: MORE INFORMATION

Domain Fishing 1.0 – Look for Recognizable Protein Domains

Domain Fishing 1.0

:: DESCRIPTION

Domain Fishing looks for recognizable protein domains in your amino acid sequence. It tries to find good sequence matches from your sequence to every protein domain defined in PFAM , a very comprehensive database that increasingly covers the protein sequence landscape.

::DEVELOPER

Biomolecular Modelling Laboratory, Cancer Research UK London Research Institute

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Web Browser

:: DOWNLOAD

  NO

:: MORE INFORMATION

Citation

Contreras-Moreira,B. and Bates,P.A. (2002).
Domain Fishing: a first step in protein comparative modelling.
Bioinformatics 18: 1141-1142.