DIAMOND v2.0.12 / AC-DIAMOND v1.0 – Accelerated BLAST compatible local Sequence Aligner

DIAMOND v2.0.12 / AC-DIAMOND v1.0

:: DESCRIPTION

DIAMOND is a sequence aligner for protein and translated DNA searches, designed for high performance analysis of big sequence data.

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AC-DIAMOND attempts to speed up DIAMOND via better SIMD parallelization and compressed indexing.

::DEVELOPER

the Algorithms in Bioinformatics lab. / Huijun Mai

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

DIAMOND , AC-DIAMOND

:: MORE INFORMATION

Citation

Buchfink B, Xie C, Huson DH.
Fast and sensitive protein alignment using DIAMOND.
Nat Methods. 2015 Jan;12(1):59-60. doi: 10.1038/nmeth.3176. Epub 2014 Nov 17. PMID: 25402007.

Mai H, Zhang Y, Li D, Leung HC, Luo R, Wong CK, Ting HF, Lam TW.
AC-DIAMOND v1: accelerating large-scale DNA-protein alignment.
Bioinformatics. 2018 Nov 1;34(21):3744-3746. doi: 10.1093/bioinformatics/bty391. PMID: 29771282.

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