BioParishodhana – integrating BLAST, ClustalW, primer3 and Restriction Digestion tools

BioParishodhana

:: DESCRIPTION

BioParishodhana integrates tools for similarity search, primer designing, and restriction enzyme digestion are required in almost all biological research.

::DEVELOPER

Institute of Bioinformatics and Applied Biotechnology, Bangalore, India,

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Vangala RK, Singh L, Gupta RP.
BioParishodhana: A novel graphical interface integrating BLAST, ClustalW, primer3 and restriction digestion tools.
Bioinformation. 2012;8(13):639-43. doi: 10.6026/97320630008639. Epub 2012 Jul 6. PMID: 22829746; PMCID: PMC3400990.

ClustalW-MPI 0.13 – ClustalW Analysis using Distributed and Parallel Computing

ClustalW-MPI 0.13

:: DESCRIPTION

ClustalW-MPI is a distributed and parallel implementation of ClustalW. All three steps have been parallelized to reduce the execution time. The software uses a message-passing library called MPI (Message Passing Interface) and runs on distributed workstation clusters as well as on traditional parallel computers.

::DEVELOPER

Bioinformatics Institute of Singapore.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

ClustalW-MPI

:: MORE INFORMATION

Citation:

Kuo-Bin Li,
ClustalW-MPI: ClustalW Analysis Using Distributed and Parallel Computing ,
Bioinformatics, 2003, 19(12), 1585–1586.

ClustalW / ClustalX 2.1 – Multiple Sequence Alignment

ClustalW / ClustalX 2.1

:: DESCRIPTION

Clustal W is a general purpose multiple alignment program for DNA or proteins.

Clustal X provides a window-based user interface to the ClustalW multiple alignment program.

EBI ClustalW Server

::DEVELOPER

Clustal is currently maintained at the Conway Institute UCD Dublin by Des Higgins, Fabian Sievers, David Dineen, and Andreas Wilm.

:: SCREENSHOTS

:: REQUIREMENTS

Windows/Mac OsX/ Linux

:: DOWNLOAD

ClustalW / ClustalX ; Documentation

:: MORE INFORMATION

Citation:

“Clustal W and Clustal X version 2.0″, Larkin M., et al. Bioinformatics 2007 23(21):2947-2948