Tag: Parallel Computing

ParaHaplo 4.0 beta – Tools for Haplotype-based Whole-genome Association Study using Parallel Computing

ParaHaplo 4.0 beta

:: DESCRIPTION

ParaHaplo is developing parallel computing tools for genome-wide association studies.

::DEVELOPER

Laboratory for Medical Science Mathematics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Java
  • OpenMPI version 1.2.5, or MPICH version 1.2.7p1

:: DOWNLOAD

 ParaHaplo

:: MORE INFORMATION

Citation

ParaHaplo 3.0: A program package for imputation and a haplotype-based whole-genome association study using hybrid parallel computing.
Misawa K, Kamatani N.
Source Code Biol Med. 2011 May 24;6(1):10. doi: 10.1186/1751-0473-6-10.

ClustalW-MPI 0.13 – ClustalW Analysis using Distributed and Parallel Computing

ClustalW-MPI 0.13

:: DESCRIPTION

ClustalW-MPI is a distributed and parallel implementation of ClustalW. All three steps have been parallelized to reduce the execution time. The software uses a message-passing library called MPI (Message Passing Interface) and runs on distributed workstation clusters as well as on traditional parallel computers.

::DEVELOPER

Bioinformatics Institute of Singapore.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

  ClustalW-MPI

:: MORE INFORMATION

Citation:

Kuo-Bin Li,
ClustalW-MPI: ClustalW Analysis Using Distributed and Parallel Computing ,
Bioinformatics, 2003, 19(12), 1585–1586.