ParaHaplo 4.0 beta – Tools for Haplotype-based Whole-genome Association Study using Parallel Computing

ParaHaplo 4.0 beta

:: DESCRIPTION

ParaHaplo is developing parallel computing tools for genome-wide association studies.

::DEVELOPER

Laboratory for Medical Science Mathematics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Java
  • OpenMPI version 1.2.5, or MPICH version 1.2.7p1

:: DOWNLOAD

 ParaHaplo

:: MORE INFORMATION

Citation

ParaHaplo 3.0: A program package for imputation and a haplotype-based whole-genome association study using hybrid parallel computing.
Misawa K, Kamatani N.
Source Code Biol Med. 2011 May 24;6(1):10. doi: 10.1186/1751-0473-6-10.

PS_SNP – Prioritize and Select SNPs for Whole Genome Association Studies with Two-stage Designs

PS_SNP

:: DESCRIPTION

PS_SNP is a novel SNP selection procedure for whole genome association studies with two-stage designs.

::DEVELOPER

Jing Li

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 PS_SNP

:: MORE INFORMATION

Citation

Jing Li.
Prioritize and select SNPs for association studies with multi-stage designs.
J Comput Biol. 2008 Apr;15(3):241-57.