BioParishodhana – integrating BLAST, ClustalW, primer3 and Restriction Digestion tools

BioParishodhana

:: DESCRIPTION

BioParishodhana integrates tools for similarity search, primer designing, and restriction enzyme digestion are required in almost all biological research.

::DEVELOPER

Institute of Bioinformatics and Applied Biotechnology, Bangalore, India,

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Vangala RK, Singh L, Gupta RP.
BioParishodhana: A novel graphical interface integrating BLAST, ClustalW, primer3 and restriction digestion tools.
Bioinformation. 2012;8(13):639-43. doi: 10.6026/97320630008639. Epub 2012 Jul 6. PMID: 22829746; PMCID: PMC3400990.

DesignPrimer – Design PCR Primer Pairs for the SciRoKo output using Primer3

DesignPrimer

:: DESCRIPTION

The perl script DesignPrimer can be used to design PCR primer pairs for the SciRoKo output using Primer3. An output file is generated that can be directly sent to a company for primer synthesis.

::DEVELOPER

Robert Kofler

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / WIndows / MacOsX
Perl

:: DOWNLOAD

DesignPrimer

:: MORE INFORMATION

mPrimer3 1.0 – Modification of Primer3

mPrimer3 1.0

:: DESCRIPTION

mPrimer3 (Modified Primer3) is a modification of Primer3

mPrimer3 Online Version

::DEVELOPER

Department of Bioinformatics, University of Tartu

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux
perl

:: DOWNLOAD

mPrimer3

:: MORE INFORMATION

Citation

Bioinformatics. 2007 May 15;23(10):1289-91. Epub 2007 Mar 22.
Enhancements and modifications of primer design program Primer3.
Koressaar T, Remm M.