Barcoded Data Preparation Tools – Preparation of Raw Illumina Reads for Further Analysis

Barcoded Data Preparation Tools

:: DESCRIPTION

Barcoded Data Preparation Tools is a scripts included are for use in preparation of raw illumina reads for further analysis.

::DEVELOPER

The Comai Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

 Barcoded Data Preparation Tools

:: MORE INFORMATION

rlsim 1.4 – Simulating RNA-seq library Preparation with Parameter Estimation

rlsim 1.4

:: DESCRIPTION

The rlsim package is a collection of tools for simulating RNA-seq library construction, aiming to reproduce the most important factors which are known to introduce significant biases in the currently used protocols: hexamer priming, PCR amplification and size selection.

::DEVELOPER

Goldman Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python
  • Biopython

:: DOWNLOAD

  rlsim

:: MORE INFORMATION

Citation:

Botond Sipos, Tim Massingham and Nick Goldman (2013):
rlsim – a package for simulating RNA-seq library preparation with parameter estimation.
http://bit.ly/rlsim-doc

Virtual Twitch 2.2.1 – Simulation of the Rat Phrenic Nerve-hemidiaphragm Preparation

Virtual Twitch 2.2.1

:: DESCRIPTION

The Virtual Twitch is a simulation of the rat phrenic nerve-hemidiaphragm preparation, used to the study the actions of neuromuscular blocking and reversal agents, and other drugs which affect neuromuscular transmission. The hemidiaphraghm is a large, focally innervated, respiratory skeletal muscle, composed of fast-type muscle fibres. Electrical stimulation of the phrenic nerve evokes fast, shorting-lasting muscle twitches.

::DEVELOPER

the Strathclyde Institute of Pharmacy and Biomedical Sciences

:: SCREENSHOTS

VirtualTwitch

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 Virtual Twitch

:: MORE INFORMATION