Tango 2.3.1 – Prediction of B-sheet Aggregation in unfolded Polypeptide Chains

Tango 2.3.1

:: DESCRIPTION

Tango is a computer algorithm for prediction of aggregating regions in unfolded polypeptide chains.The model used by the TANGO algorithm is designed to predict cross-beta aggregation in peptides and denatured proteins and consists of a phase-space encompassing the random coil and 4 possible structural states: beta-turn, alpha-helix, beta-sheet aggregation and alpha-helical aggregation.

::DEVELOPER

:: REQUIREMENTS

Linux/ Windows

:: DOWNLOAD

:: MORE INFORMATION

Citation

Prediction of sequence-dependent and mutational effects on the aggregation of peptides and proteins.
Fernandez-Escamilla AM, Rousseau F, Schymkowitz J, Serrano L.
Nat Biotechnol. 2004 Oct;22(10):1302-6

Reveal – Viewer for Automated active-site Predictions for Polypeptides

Reveal

:: DESCRIPTION

Reveal is a viewer for automated active-site predictions for polypeptides

::DEVELOPER

:: SCREENSHOTS

:: REQUIREMENTS

Linux / Windows / MacOsX
Java

:: DOWNLOAD

:: MORE INFORMATION

Citation

In Silico Biol. 2006;6(6):589-600.
Sequence-structure-function relation characterized in silico.
Brylinski M, Kochanczyk M, Konieczny L, Roterman I.

VeaR – Geometry-based Structural Highlighter for Polypeptides

VeaR

:: DESCRIPTION

VeaR is a software of geometry-based structural highlighter for polypeptides

::DEVELOPER

:: SCREENSHOTS

:: REQUIREMENTS

Linux / windows/ MacOsX
Java

:: DOWNLOAD

:: MORE INFORMATION

Citation

Bioinformatics. 2003 Jan;19(1):117-24.
Search for structural similarity in proteins.
Leluk J, Konieczny L, Roterman I.