Tag: Tango

TANGO 0.94 – Tools for Analysis of Nuclear Genome Organization

TANGO 0.94

:: DESCRIPTION

TANGO is a program for high-throughput processing and analysis of 3D fluorescence images, dedicated to the study of nuclear architecture. It allows to perform the complete analysis process starting from the raw images to the processed measurements (plots and statistical tests)

::DEVELOPER

TANGO team

:: SCREENSHOTS

TANGO

:: REQUIREMENTS

  • Windows / Linux / MacOsX
  • R package
  • Java
  • ImageJ

:: DOWNLOAD

 TANGO

:: MORE INFORMATION

Citation

Bioinformatics. 2013 Jul 15;29(14):1840-1. doi: 10.1093/bioinformatics/btt276. Epub 2013 May 16.
TANGO: a generic tool for high-throughput 3D image analysis for studying nuclear organization.
Ollion J1, Cochennec J, Loll F, Escudé C, Boudier T.

TANGO 1.2.0 – Taxonomic Assignment in Metagenomics

TANGO 1.2.0

:: DESCRIPTION

TANGO  is a tool for the optimal taxonomic assignment of ambiguous pyrosequencing reads.

::DEVELOPER

G. Valiente

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/Windows/MacOsX
  • Perl

:: DOWNLOAD

 TANGO

:: MORE INFORMATION

Citation:

Bioinformatics. 2014 Jan 1;30(1):17-23. doi: 10.1093/bioinformatics/btt256. Epub 2013 May 3.
Further steps in TANGO: improved taxonomic assignment in metagenomics.
Alonso-Alemany D1, Barré A, Beretta S, Bonizzoni P, Nikolski M, Valiente G.

BMC Bioinformatics. 2011 Jan 7;12:8. doi: 10.1186/1471-2105-12-8.
Flexible taxonomic assignment of ambiguous sequencing reads.
Clemente JC, Jansson J, Valiente G.

Tango 2.3.1 – Prediction of B-sheet Aggregation in unfolded Polypeptide Chains

Tango 2.3.1

:: DESCRIPTION

Tango is a computer algorithm for prediction of aggregating regions in unfolded polypeptide chains.The model used by the TANGO algorithm is designed to predict cross-beta aggregation in peptides and denatured proteins and consists of a phase-space encompassing the random coil and 4 possible structural states: beta-turn, alpha-helix, beta-sheet aggregation and alpha-helical aggregation.

::DEVELOPER

Serrano Group

:: REQUIREMENTS

  • Linux/ Windows

:: DOWNLOAD

 Tango

:: MORE INFORMATION

Citation

Prediction of sequence-dependent and mutational effects on the aggregation of peptides and proteins.
Fernandez-Escamilla AM, Rousseau F, Schymkowitz J, Serrano L.
Nat Biotechnol. 2004 Oct;22(10):1302-6