:: DESCRIPTION
GenomeLaser is a tool for haplotype inference from pedigree genotypes.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
GenomeLaser: fast and accurate haplotyping from pedigree genotypes.
Li W, Fu G, Rao W, Xu W, Ma L, Guo S, Song Q.
Bioinformatics. 2015 Aug 18. pii: btv452.
:: DESCRIPTION
Roslin’s ResSpecies GenotypeChecker is a desktop tool for identifying likely data errors in pedigree/genotype datasets and to assist data cleansing.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Anim Genet. 2011 Oct;42(5):560-2. doi: 10.1111/j.1365-2052.2011.02183.x. Epub 2011 Mar 24.
Genotypechecker: an interactive tool for checking the inheritance consistency of genotyped pedigrees.
Paterson T, Law A.
:: DESCRIPTION
nucular is a program that splits extended pedigrees into nuclear families, with the option of recoding all sibs as half-sibs with distinct mothers of fathers.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Genet. 2005 Dec 30;6 Suppl 1:S159.
A simple nonparametric multipoint procedure to test for linkage through mothers or fathers as well as imprinting effects in the presence of linkage.
Lemire M.
:: DESCRIPTION
SPIP (simulate pedigrees in populations) simulates the transmission of genes from parents to offspring in a population having demographic structure defined by the user. Numerous variables controlling the age structure of the population, the number of offspring produced, the variance in male and female reproductive success, survival rates of different age classes, mate fidelity, duration of simulation, etc. can be specified by the user.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Anderson, E. C., and K. K. Dunham.2005.
SPIP 1.0: a program for simulating pedigrees and genetic data in age-structured populations.
Molecular Ecology Notes 5(2):459-461.
:: DESCRIPTION
FRANz is a fast and flexible parentage inference program for natural populations.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
FRANz: Reconstruction of wild multi-generation pedigrees.
Markus Riester, Peter F Stadler, Konstantin Klemm.
Bioinformatics. 2009. 25:2134-2139.
:: DESCRIPTION
PediTree is a software package to recursively analyse plant pedigree data which is arranged in a simple-single table database structure.
Peditree will lookup the parents of a variety/cultivar, then the parents of the parents (grandparents)and so on. The result is displayed in a explorer style, collapsible tree or a pedigree drawing (see images below; click to enlarge).
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
J Hered. 2005 Jul-Aug;96(4):465-8. Epub 2005 Apr 13.
Peditree: pedigree database analysis and visualization for breeding and science.
van Berloo R, Hutten RC.
:: DESCRIPTION
PedigreeSim is software that generates simulated genetic marker data of individuals in pedigreed populations. A population can consist of either diploid or tetraploid individuals. PedigreeSim can simulate meioses with or without chiasma interference, and in tetraploids it can simulate meioses with two bivalents or one quadrivalent per set of hom(oe)ologous chromosomes. Also varying probabilities of preferential versus random pairing of chromosomes can be simulated, allowing to simulate amphidiploids as well as autotetraploids and intermediate forms.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Voorrips RE, Maliepaard CA (2012)
The simulation of meiosis in diploid and tetraploid organisms using various genetic models.
BMC Bioinformatics. 2012 Sep 26;13:248.
:: DESCRIPTION
PedHunter is a software package that facilitates creation and verification of pedigrees within large genealogies.
::DEVELOPER
Richa Agarwala and Woei-jyh (Adam) Lee and Alejandro Schäffer.
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Agarwala R, Biesecker LG, Hopkins KA, Francomano CA, Schäffer AA
Software for constructing and verifying pedigrees within large Genealogies and an application to the Old Order Amish of Lancaster County.
Genome Research 8:211-221, 1998.
:: DESCRIPTION
MQscore is a program which can be useful for parametric linkage analysis of quantitative traits on the base of large pedigrees without loops.
MQscore_SNP is a program for multipoint parametric linkage analysis of quantitative traits and SNP markers on the base of large pedigrees without loops.
::DEVELOPER
Laboratory of the Methods of Genetic Analysis , Institute of Cytology and Genetics, Novosibirsk, Russia.
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Ann Hum Genet. 2010 May;74(3):286-9.
MQScore_SNP software for multipoint parametric linkage analysis of quantitative traits in large pedigrees.
Axenovich TI, Aulchenko YS.
:: DESCRIPTION
PedPeel prepares pedigree data for calculation of Elston-Stewarts’ likelihood function. It finds an optimal way to peel a pedigree and returns text file containing 7 description arrays.
::DEVELOPER
Laboratory of the Methods of Genetic Analysis , Institute of Cytology and Genetics, Novosibirsk, Russia.
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Comput Biol Chem. 2007 Jun;31(3):173-7. Epub 2007 Mar 24.
Optimal peeling order for pedigrees with incomplete genotypic information.
Belonogova NM, Axenovich TI.
