Hapi 1.03 – Rapid Haplotype Inference for Nuclear Families

Hapi 1.03

:: DESCRIPTION

Hapi is a program that efficiently infers minimum recombinant and maximum likelihood haplotypes for nuclear families.

::DEVELOPER

Williams lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 Hapi

:: MORE INFORMATION

Citation:

Genome Biol. 2010;11(10):R108. doi: 10.1186/gb-2010-11-10-r108. Epub 2010 Oct 29.
Rapid haplotype inference for nuclear families.
Williams AL, Housman DE, Rinard MC, Gifford DK.

Pathway-PDT 2016 – A Flexible Pathway Analysis Tool for Nuclear Families

Pathway-PDT 2016

:: DESCRIPTION

Pathway-PDT uses the framework of Pedigree Disequilibrium Test (PDT) for general family data, to perform pathway analysis.

::DEVELOPER

Pathway-PDT team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 Pathway-PDT

:: MORE INFORMATION

Citation

Pathway-PDT: a flexible pathway analysis tool for nuclear families.
Park YS, Schmidt M, Martin ER, Pericak-Vance MA, Chung RH.
BMC Bioinformatics. 2013 Sep 4;14:267. doi: 10.1186/1471-2105-14-267

nucular 20050222 – Splits Extended Pedigrees into Nuclear Families

nucular 20050222

:: DESCRIPTION

nucular is a program that splits extended pedigrees into nuclear families, with the option of recoding all sibs as half-sibs with distinct mothers of fathers.

::DEVELOPER

Mathieu Lemire

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C Compiler

:: DOWNLOAD

  nucular

:: MORE INFORMATION

Citation

BMC Genet. 2005 Dec 30;6 Suppl 1:S159.
A simple nonparametric multipoint procedure to test for linkage through mothers or fathers as well as imprinting effects in the presence of linkage.
Lemire M.