Biscap and cfdr 0.11 – Scripts for post-alignment Snp-calling and Verification

Biscap and cfdr 0.11

:: DESCRIPTION

Biscap and cfdr is a script for determining homozygous and heterozygous positions from an alignment using binomial probabilities from a predicted error rate (BiSCaP) and a method to benchmark the accuracy of this and other alignment/SNP-calling methods (cFDR)

::DEVELOPER

Biscap and cfdr team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX
  • Perl

:: DOWNLOAD

 Biscap and cfdr

:: MORE INFORMATION

Citation

Sci Rep. 2013;3:1512. doi: 10.1038/srep01512.
Using false discovery rates to benchmark SNP-callers in next-generation sequencing projects.
Farrer RA1, Henk DA, MacLean D, Studholme DJ, Fisher MC.

PedHunter 2.0 – Creation and Verification of Pedigrees within large Genealogies

PedHunter 2.0

:: DESCRIPTION

PedHunter is a software package that facilitates creation and verification of pedigrees within large genealogies.

::DEVELOPER

Richa Agarwala and Woei-jyh (Adam) Lee and Alejandro Schäffer.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C Compiler

:: DOWNLOAD

 PedHunter

:: MORE INFORMATION

Citation

Agarwala R, Biesecker LG, Hopkins KA, Francomano CA, Schäffer AA
Software for constructing and verifying pedigrees within large Genealogies and an application to the Old Order Amish of Lancaster County.
Genome Research 8:211-221, 1998.