Coancestry 1.0.1.2 – Simulate, Estimate and Analyse Relatedness and Inbreeding Coefficients

Coancestry 1.0.1.2

:: DESCRIPTION

COANCESTRY is a computer program that implements 7 methods to estimate the pairwise relatedness between individuals and 4 methods to estimate individual inbreeding coefficients, using individual genotypes at a set of marker loci.

:: DEVELOPER

Dr Jinliang Wang

:: SCREENSHOTS

Coancestry

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 Coancestry

:: MORE INFORMATION

Citation

COANCESTRY: a program for simulating, estimating and analysing relatedness and inbreeding coefficients.
Wang J.
Mol Ecol Resour. 2011 Jan;11(1):141-5. doi: 10.1111/j.1755-0998.2010.02885.x.

MiniInbred 2.1 – Calculate and Minimize Inbreeding Coefficients

MiniInbred 2.1

:: DESCRIPTION

MiniInbred predicts inbreeding levels in the next generation by identifying matings that yield the lowest inbreeding level in the offspring. The inbreeding coefficients resulting from all potential matings of the current breeding animals (generation 1) are calculated, and the potential matings among the current breeding animals that yield the lowest inbreeding level are identified. The program also predicts the lowest inbreeding available in the third generation. In this case, the hypothetical offspring (generation 2) of the current breeding animals are treated as ‘parents’, and the inbreeding coefficients resulting from all potential matings between the hypothetical ‘parents’ are calculated, and the potential matins among the hypothetical ‘parents’ that minimize inbreeding are identified.

::DEVELOPER

JOHN GARBE AND YANG DA , Department of Animal Science, University of Minnesota

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  •  Windows / Linux

:: DOWNLOAD

 MiniInbred

:: MORE INFORMATION

FEstim 1.3.2 – Estimation of the Inbreeding Coefficient of Individuals

FEstim 1.3.2

:: DESCRIPTION

FEstim is a software for estimation of the inbreeding coefficient of individuals through use of a dense map of genetic markers and computation of genomically controlled homozygosity mapping lodscores.

::DEVELOPER

FEstim team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux /MacOsX

:: DOWNLOAD

 FEstim

:: MORE INFORMATION

Citation

Am J Hum Genet. 2006 Jul;79(1):62-6. Epub 2006 Apr 28.
Using genomic inbreeding coefficient estimates for homozygosity mapping of rare recessive traits: application to Taybi-Linder syndrome.
Leutenegger AL, Labalme A, Genin E, Toutain A, Steichen E, Clerget-Darpoux F, Edery P.

KinInbcoef 1.1 – Calculation of Kinship and Inbreeding Coefficients

KinInbcoef 1.1

:: DESCRIPTION

KinInbcoef is a C++ program that computes inbreeding and kinship coefficients for general pedigrees

::DEVELOPER

Catherine Bourgain, Qian Zhang

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux /  Windows / MacOsX
  • C Compier

:: DOWNLOAD

 KinInbcoef

:: MORE INFORMATION