K-Estimator is a software that estimates the number of of synonymous (Ks) and nonsynonymous substitutions (Ka) per site (divergence) when comparing two aligned nucleotide sequences, both protein-coding and non-coding. Confidence intervals of the divergence estimates are obtained by Monte Carlo simulation.
TM-score is an algorithm to calculate the similarity of topologies of two protein structures. It can be exploited to quantitatively access the quality of protein structure predictions relative to native. Because TM-score weights the close matches stronger than the distant matches, TM-score is more sensitive than root-mean-square deviation (RMSD)
MSTgold calculates minimum spanning trees (MST) from protein and nucleotide sequences, from binary characters and SNPs, and from tab-delimited data such as microsatellite data. It also estimates the number of different MSTs from a data set, bootstraps MSTs, and identifies the most reliable tree among a set of equal-length MSTs.
GrowthRates is a program that calculates bacterial growth rates from the data generated by a micro-plate reader used to monitor the growth of bacterial cultures in micro-plate wells. The program automatically identifies the exponential phase of the growth curve and uses that portion of the curve to calculate growth rates and std. errors of those rates
AVP (Another Void Program) is a new method for the analysis of voids in proteins and packing quality in a single united program. Traditionally been analysed using different approaches, but in reality they are extremes of the same phenomenon – imperfect packing of atoms in the inside of a protein.
Molar Mass Calculator calculats chemical formula molar mass by adding up the individual molar masses of its constituent elements. Given a chemical formula this iPad app will calculate molar mass and subtotal masses for the substance.