Kinship 20091112 – Estimate Kinship Coefficients for Case-control analyses in the presence of Cryptic Relatedness

Kinship 20091112

:: DESCRIPTION

Kinship is a software to carry out computations to estimate kinship coefficients for case-control analyses in the presence of cryptic relatedness

::DEVELOPER

Ellen M. Wijsman

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

 Kinship

:: MORE INFORMATION

Citation:

Genet Epidemiol. 2009 Dec;33(8):668-78. doi: 10.1002/gepi.20418.
Case-control association testing in the presence of unknown relationships.
Choi Y1, Wijsman EM, Weir BS.

popkin 1.3.8 – Estimate Kinship and FST under Arbitrary Population Structure

popkin 1.3.8

:: DESCRIPTION

The popkin (population kinship) R package estimates the kinship matrix of individuals and FST from their biallelic genotypes. Our estimation framework is the first to be practically unbiased under arbitrary population structures.

::DEVELOPER

The Ochoa Lab 

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ MacOsX / Windows
  • R

:: DOWNLOAD

popkin

:: MORE INFORMATION

Citation

Ochoa, Alejandro, and John D. Storey. 2016b.
FST And Kinship for Arbitrary Population Structures II: Method of Moments Estimators.
bioRxiv doi:10.1101/083923.

KinInbcoef 1.1 – Calculation of Kinship and Inbreeding Coefficients

KinInbcoef 1.1

:: DESCRIPTION

KinInbcoef is a C++ program that computes inbreeding and kinship coefficients for general pedigrees

::DEVELOPER

Catherine Bourgain, Qian Zhang

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux /  Windows / MacOsX
  • C Compier

:: DOWNLOAD

 KinInbcoef

:: MORE INFORMATION