:: DESCRIPTION
SPC Proteomics Tools corom contains Seattle Proteome Center (SPC) – Proteomics Tools.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
this CD image contains an old version of the SPC tools. Please see the TPP wiki page for the most updated information.
:: DESCRIPTION
GCellIQ ( Genomic Cell Image Quantitator ) is user-friendly open-source software package that aims to provide an automated pipeline for processing large volumes of digital images generated from high-content screening (HCS), including those by RNAi or small compound screening. It’s suitable for batch processing large image dataset with little human interference.
::DEVELOPER
TMHRI Center for Bioengineering and Informatics
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Li F, Zhou X, Zhu J, Ma J, Huang X, et al. (2007)
High content image analysis for human H4 neuroglioma cells exposed to CuO nanoparticles.
Bmc Biotechnology 7: p. 66.
:: DESCRIPTION
VANO (Volume-object annotation system) is a System for 3D multicolor image stacks. VANO provides a well-coordinated way to annotate hundreds or thousands of 3D image objects. It combines 3D views of images and spread sheet neatly, and is just easy to manage 3D segmented image objects.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Peng, H., Long, F., Myers, E.W.,
“VANO: a volume-object image annotation system,”
Bioinformatics, Vol. 25, No. 5, pp. 695-697, 2009.
:: DESCRIPTION
GelAnalyzer is a free 1D gel electrophoresis image analysis software .The process of gel image analysis is straightforward and covers all the main aspects of evaluation from automatic lane detection to precise molecular weight calculations. Many tools help you to improve the accuracy of gel evaluation, such as background subtraction methods and Rf calibration. These features make GelAnalyzer a real solution to gel image analysis in cost sensitive enviroments. With GelAnalyzer you don’t need expensive gel documentation system for simple image evaluation. You may obtain the gel image with a common digital camera, or even with your cell phone, and use GelAnalyzer to get the results in just a few seconds.
::DEVELOPER
lazarsoftware.com
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
By downloading, copying or installing any version of GelAnalyzer you accept to be bound by the End User Licence Agreement.
:: DESCRIPTION
CMEIAS Color Segmentation is a free, improved computing technology designed to alleviate the laborious task of segmenting foreground objects of interest (e.g., microbes) from background in complex digital micrographs, as commonly encountered when preparing digital images of microbial populations and communities in environmental samples for quantitative image analysis.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Colin A. Gross, Chandan K. Reddy and Frank B. Dazzo. 2009.
CMEIAS color segmentation: an improved computing technology to process color images for quantitative microbial ecology studies at single-cell resolution.
Microbial Ecology (2010) 59: 400-414. DOI:10.1007/s00248-009-9616-7.
:: DESCRIPTION
LocusView is a program for generating images of chromosomal regions annotated with genomic features, experimental data, and analysis results.
:DEVELOPER
Tracey Petryshen, Andrew Kirby, and Mark Ainscow , The Broad Institute, Cambridge, MA
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Please cite “T. Petryshen, A. Kirby, M. Ainscow, unpublished software” when using LocusView in publications
If you aren’t already registered, please send an email to locusview@broadinstitute.orgwith your name and email address, so that we can update you on new releases, bug fixes, etc.
:: DESCRIPTION
Suprim (SUpervisor for the PRocessing of IMages) is a flexible, modular software package intended for the processing of electron microscopy images is presented. The system consists of a set of image processing tools or filters, written in the C programming language, and a command line style user interface based on the UNIX shell. The pipe and filter structure of UNIX and the availability of command files in the form of shell scripts eases the construction of complex image processing procedures from the simpler tools. Implementation of a new image processing algorithm in SUPRIM may often be performed by construction of a new shell script, using already existing tools. Current, the package has been used for two- and three-dimensional image processing and reconstruction of macromolecules and other structures of biological interest.
::DEVELOPER
the Beckman Institute Imaging Technology Group
:: SCREENSHOTS
Command Lines
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
“SUPRIM: Easily Modified Image Processing Software”
John P. Schroeter and Jean-Pierre Bretaudiere
Journal of Structural Biology 116, 131-137 (1996)Article No. 0021. Volume 116, No. 1.
:: DESCRIPTION
JavaScope is a web-based application designed to operate a Philips CM200 Transmission Electron Microscope (TEM) and to view digital images remotely. As a teaching and demonstration tool it can provide a “bulletproof” interface to the instrument for na?ve users and spectators. As a service tool it can be used by expert technicians to illustrate and explore specific problems with an instrument. This allows for a straightforward determination of the nature of a problem which benefits both customer and service provider. In this paper we will describe the implementation of the JavaScope application and discuss some of the benefits and disadvantages of the system.
::DEVELOPER
the Beckman Institute Imaging Technology Group
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
If you have any questions, please mail javascope@itg.uiuc.edu.
:: DESCRIPTION
TOPO2 is an open source program written in Python for the creation of transmembrane protein 2D topology images. It makes no attempt to predict the TMDs that it displays. The user needs to supply that information. Residues of interest can be highlighted, if desired.
::DEVELOPER
the Resource for Biocomputing, Visualization, and Informatics (RBVI) at UCSF
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Contact Susan Jean Johns (email: johns@cgl.ucsf.edu) for more information about the software or if you are having problems with the site.
