:: DESCRIPTION
Grid Cell Counter is a freeware biology tool that will help you to manually count the cells shown on computer screen by displaying a transparent or semi-transparent grid over your image.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
Cell Counter is for counting cells (or other things). There is a choice for 4, 8, 12, 16 counters. Different (default) alarms and names. There is also a total sum with alarm. Custom settings, copy to Excel, etc..
::DEVELOPER
the Cellular Imaging Core Facility
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
This software is free to anyone, just for fun send author a postcard:
AMC, Cell biology & Histology CMO, Ron Hoebe, Room M3-106-1
Meibergdreef 15, 1105 AZ Amsterdam, The Netherlands
:: DESCRIPTION
Cell and Cell Structure, that’s written for middle school students, and also provides a great review for high school students. Learn about life’s smallest unit – the cell. Students and teachers will appreciate the detailed 2D and 3D imagery, stunning graphics and in-depth content. Specifically designed for middle-school students, and offering a detailed review for high school students, this biology app is the perfect compliment to the life-science curriculum.
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:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
MiXCR is an universal software for fast and accurate analysis of T- and B- cell receptor repertoire sequencing data
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: MORE INFORMATION
Citation:
Nat Methods. 2015 May;12(5):380-1. doi: 10.1038/nmeth.3364.
MiXCR: software for comprehensive adaptive immunity profiling.
Bolotin DA, Poslavsky S, Mitrophanov I, Shugay M3, Mamedov IZ, Putintseva EV, Chudakov DM.
:: DESCRIPTION
Meta!Blast is a real-time 3D action-adventure game that puts you in the pilot’s seat. Shrink down to microscopic size and explore the vivid, dynamic world of a soybean plant cell spinning out of control. Interact with numerous characters, fight off plant pathogens, and discover how important plants are to the survival of the human race. The eukaryotic cell is comprised of a dizzying array of molecules, proteins, and organelles. To understand the nature of these entities and their processes across both time and space can be a daunting task. The goal of Meta!Blast is to provide a medium that lends itself to the comprehension of cell and metabolic biology.
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:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Schneller W, Campbell PJ, Bassham D, Wurtele ES 2012.
Meta!Blast computer pipeline from science to 3D art to education.
Engineering of Virtual Reality, Eds: McDowall IE, Dolinsky M. International Society for Optics and Photonics. SPIE 828905. http://dx.doi.org/10.1117/12.911289
:: DESCRIPTION
CellProfiler is a cell image analysis software which quantitatively measures phenotypes from thousands of images automatically, usually for high-throughput image-based cell screening experiments.CellProfiler is free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.
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:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Carpenter AE, Jones TR, Lamprecht MR, Clarke C, Kang IH, Friman O, Guertin DA, Chang JH, Lindquist RA, Moffat J, Golland P, Sabatini DM (2006)
CellProfiler: image analysis software for identifying and quantifying cell phenotypes.
Genome Biology 7:R100. PMID: 17076895
Jones TR, Kang IH, Wheeler DB, Lindquist RA, Papallo A, Sabatini DM, Golland P, Carpenter AE (2008)
CellProfiler Analyst: data exploration and analysis software for complex image-based screens.
BMC Bioinformatics 9(1):482/doi: 10.1186/1471-2105-9-482. PMID: 19014601 PMCID: PMC2614436
:: DESCRIPTION
CellTracker is an image processing software to perform automated, semi-automated, and manual cell migration detection.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
CellTracker (not only) for dummies.
Piccinini F, Kiss A, Horvath P.
Bioinformatics. 2015 Nov 20. pii: btv686.
:: DESCRIPTION
cellHTS2 is a software package implemented in Bioconductor/R to analyze cell-based high-throughput RNAi screens.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Genome Biol. 2006;7(7):R66.
Analysis of cell-based RNAi screens.
Boutros M, Brás LP, Huber W.
Pelz., O., Gilsdorf, M., Boutros, M. (2010).
web cellHTS2: A web application for the analysis of high-throughput screening data.
BMC Bioinformatics 11:185.
:: DESCRIPTION
LBIBCell (Lattice Boltzmann Immersed Boundary) is a 2D simulation software to study the interplay between cell and tissue mechanics and biomolecular signaling.
::DEVELOPER
Computational Biology (CoBi)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
LBIBCell: A Cell-Based Simulation Environment for Morphogenetic Problems.
Tanaka S, Sichau D, Iber D.
Bioinformatics. 2015 Mar 13. pii: btv147.
:: DESCRIPTION
SmartCell is a program developed to provide an idea of the evolution of a network in a whole, single cell. Based on stochastic algorithms, SmartCell needs multiple runs to have mean results.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
SmartCell, a framework to simulate cellular processes that combines stochastic approximation with diffusion and localisation: analysis of simple networks.
Ander M, Beltrao P, Di Ventura B, Ferkinghoff-Borg J, Foglierini M, Kaplan A, Lemerle C, Tomás-Oliveira I, Serrano L.
Syst Biol (Stevenage). 2004 Jun;1(1):129-38.
