:: DESCRIPTION
libGenome is a freely available toolkit for developing sequence analysis software in C++. It is intended to take the hassle out of performing common tasks on genetic sequence and annotation data.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data. Our library applies a unique generic design that guarantees high performance, generality, extensibility, and integration with other libraries. SeqAn is easy to use and simplifies the development of new software tools with a minimal loss of performance.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
SeqAn an efficient, generic C++ library for sequence analysis.
Döring A, Weese D, Rausch T, Reinert K.
BMC Bioinformatics. 2008 Jan 9;9:11.
:: DESCRIPTION
libScopes can be used to predict the network behavior for metabolic, signaling and gene regulatory networks. The library can calculate biochemical scopes based on give biochemical reaction networks and predefined initial conditions
::DEVELOPER
:: SCREENSHOTS
N/A
::REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2012 Feb 15;28(4):557-63. doi: 10.1093/bioinformatics/btr697. Epub 2011 Dec 22.
Modeling mechanistic biological networks: an advanced Boolean approach.
Handorf T1, Klipp E.
:: DESCRIPTION
fwdpp is a C++ template library for developing forward-time simulations under population- and quantitative- genetic models.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Thornton, K. R. (2014)
A C++ template library for efficient forward-time population genetic simulation of large populations.
Genetics 98:157-166 PMID: 24950894,
:: DESCRIPTION
vcflib is a simple C++ library for parsing and manipulating Variant Call Format (VCF) files, + many command-line utilities
::DEVELOPER
Erik Garrison erik.garrison@bc.edu
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
LIBFBAT programming library s robust both to genotyping errors and missing genotypes. The underlying method consists in considering an incomplete data model where the true unobserved genotypes produce the observed one through an explicit genotyping error model.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Gregory Nuel, Yousri Slaoui and Vincent Miele,
libfbat: a C++ library for family based association testing,
Proceedings of JOBIM, 2008
:: DESCRIPTION
NGS++ is a programming library in C++11 specialized in manipulating both next-generation sequencing (NGS) datasets and genomic information files.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2013 Aug 1;29(15):1893-4. doi: 10.1093/bioinformatics/btt312. Epub 2013 Jun 4.
NGS++: a library for rapid prototyping of epigenomics software tools.
Nordell Markovits A1, Joly Beauparlant C, Toupin D, Wang S, Droit A, Gevry N.
:: DESCRIPTION
libStatGen is a C++ library and tools for handling and analyzing next generation sequencing and genotyping data.The library contains easy-to-use APIs for developing tools for processing and analyzing next generation sequencing and genotyping data. Allows easy processing of SAM/BAM, GLF, and FASTQ
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: MORE INFORMATION
:: DESCRIPTION
GFMCMC (GLUT for Markov Chain Monte Carlo) This is a library of C code that I wrote to use the (relatively) platform-independent OpenGL Utilities Toolkit (GLUT) for rendering pictures of one’s MCMC simulation in real time. It is essentially a small application programming interface.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
Alnpack is a set of programs and a C++ library for pairwise local alignment of DNA or protein sequences using Smith-Waterman algorithm.
:: DEVELOPER
Genetic Information Research Institute
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Farrar M.
Striped Smith-Waterman speeds database searches six times over other SIMD implementations.
Bioinformatics. 2007 Jan 15;23(2):156-61. Epub 2006 Nov 16.
