Tag: Average

acACS 1.0 – Auto Covariance of Average Chemical Shifts

acACS 1.0

:: DESCRIPTION

acACS is a web-servers for generating auto covariance of average chemical shifts from native amino acids and second structure.

::DEVELOPER

The Li’s Group of Theoretical Biophysics and Bioinformatics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Borowser

:: DOWNLOAD

  NO

:: MORE INFORMATION

Citation

Guo-liang Fan and Qianzhong Li,
Predicting protein submitochondria locations by combining different descriptors into the general form of Chou’s pseudo amino acid composition,
Amino Acids, 43 (2012) 545–555.

Guoliang Fan and Qianzhong Li,
Predict mycobacterial proteins subcellular locations by incorporating pseudo-average chemical shift into the general form of Chou’s pseudo amino acid composition,
Journal of Theoretical Biology, 304 (2012) 88–95.

GAAS 0.17 – Calculate Accurate Community Composition and Average Genome Size

GAAS 0.17

:: DESCRIPTION

GAAS (Genome relative Abundance and Average Size) is a bioinformatic tool to calculate accurate community composition and average genome size in metagenomes by using BLAST, advanced parsing of hits and correction of genome length bias.

::DEVELOPER

Florent E. Angly (florent.angly@gmail.com)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 GAAS

:: MORE INFORMATION

Citation

PLoS Comput Biol. 2009 Dec;5(12):e1000593. Epub 2009 Dec 11.
The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes.
Angly FE , et al.

Surface Racer 5.0 – Calculation of Accessible and Molecular Surface Areas and Average Surface Curvature

Surface Racer 5.0

:: DESCRIPTION

Surface Racer calculates exact accessible surface area, molecular surface area and average curvature of molecular surface for macromolecules. The program also analyzes cavities in the protein interior inaccessible to solvent from outside. The output includes the surface parameters for each residue in addition to those for individual atoms.

DEVELOPER

Tsodikov laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / MacOsX

:: DOWNLOAD

  Surface Racer

:: MORE INFORMATION

Citation

Tsodikov, O. V., Record, M. T. Jr. and Sergeev, Y. V. (2002).
A novel computer program for fast exact calculation of accessible and molecular surface areas and average surface curvature.
J. Comput. Chem., 23, 600-609.