:: DESCRIPTION
Plasmidomics is an open source program for easy drawing of plasmids and vector maps with high-quality graphics export.
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:: DOWNLOAD
:: MORE INFORMATION
License
GPLv3
:: DESCRIPTION
BVTech Plasmid is DNA sequence analysis and plasmid drawing software for Windows PCs. You can use it to plan your DNA cloning, draw high quality plasmid maps, analyse your DNA sequencing data, align sequences, and much more. BVTech Plasmid is easy to use, powerful, and affordable for molecular biologists at any level.
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:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
PlasMapper automatically generates and annotates plasmid maps using only the plasmid DNA sequence as input. Plasmid sequences up to 20,000 bp may be annotated and displayed. Plasmid figures may be rendered in PNG, JPG, SVG or SVGZ format. PlasMapper supports an extensive array of display options.
::DEVELOPER
Wishart Pharmaceutical Research Group
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:: DOWNLOAD
:: MORE INFORMATION
Citation:
Xiaoli Dong, Paul Stothard, Ian J. Forsythe, and David S. Wishart
“PlasMapper: a web server for drawing and auto-annotating plasmid maps”
Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W660-4.
:: DESCRIPTION
XPlasMap is a DNA mapping program. It draws plasmid or linear DNA maps, showing features such as genes, multiple cloning sites, and restriction sites. The maps are highly customizable: colors, styles, position, and overall appearance of features can be changed. Fragments can be copied or cut, and inserted into different maps or turned into maps on their own (virtual cloning). FastA, text, and GenBank files can be imported directly, making maps of long and complex sequences (e.g. genomic sequences) quick and easy to prepare.
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XPlasMap is free (as in no cost) and can be redistributed as a complete package.
:: DESCRIPTION
SimVector is an exceptional tool for drawing publication and vector catalog quality maps and designing cloning experiments.
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:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
NoeClone integrates cloning design, map and flowchart drawing, sequence analysis, and result presentation in one coherent system as the “Office for the biologist”.
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:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
ChemicPen is a software for drawing 2D chemical formulae and reactions. Allows you to print and export formulae in other documents.
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:: DOWNLOAD
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:: DESCRIPTION
WinDrawChem is a freeware two-dimensional molecule drawing program for Windows. It is similar in functionality to other molecule drawing programs such as ChemDraw (TM, CambridgeSoft). It can read and write MDL Molfiles to allow sharing between XDrawChem and other chemistry applications, as well as read ChemDraw binary and text files.
::DEVELOPER
Bryan Herger , bherger@users.sourceforge.net
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:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
WinDrawChem is distributed under the terms of the GNU General Public License. There is also additional copyright information. These files are also included in the distribution.
:: DESCRIPTION
MCDL (Modular Chemical Descriptor Language) is a small Java molecular viewer/editor for chemical structures, stored in Modular Chemical Descriptor Language linear notation. The editor supports the MCDL format, in which structures are presented in compact canonical form and is capable of restoring bond orders as well as of managing atom and bond drawing overlap. A small database of cage and large cyclic fragment is used for optimal representation of difficult-to-draw molecules. The improved algorithm of the structure diagram generation can be used for other chemical notations that lack atomic coordinates (SMILES, InChI).
::DEVELOPER
Sergei Trepalin (Institute of Physiologically Active Compounds RAS)
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:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Molecules 2006, 11(4), 219-231; doi:10.3390/11040219
A Java Chemical Structure Editor Supporting the Modular Chemical Descriptor Language (MCDL)
Sergei V. Trepalin, Alexander V. Yarkov , Igor V. Pletnev and Andrei A. Gakh
:: DESCRIPTION
JMolDraw is a small Java-Applet for drawing organic structures on your computer. The applet also supports Im/Export of MDL-Molfiles, drawing of Query-Atoms for database search, templates and much more.
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:: MORE INFORMATION
License: GPL
