Tag: Molecular Viewer

ePMV 0.5 – embedded Python Molecular Viewer

ePMV 0.5

:: DESCRIPTION

ePMV (embedded Python Molecular Viewer) runs molecular modeling software directly inside of professional 3D animation applications (hosts) to provide simultaneous access the capabilities of all of the systems. Uniting host and scientific algorithms into a single interface allows users from varied backgrounds to assemble professional quality visuals and to perform computational experiments with relative ease.

::DEVELOPER

ePMV Team

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows / Mac OsX
  • Python

:: DOWNLOAD

 ePMV

:: MORE INFORMATION

Citation:

Johnson, G.T. and Autin, L., Goodsell, D.S., Sanner, M.F., Olson, A.J. (2011).
ePMV Embeds Molecular Modeling into Professional Animation Software Environments.
Structure 19, 293-303.

CMol 1.3.3 – Molecular Viewer for the iPad, iPhone and iPod touch

CMol 1.3.3

:: DESCRIPTION

CMol is a molecular viewer designed specifically for the iPad, iPhone and iPod touch, offering a more powerful system for displaying and understanding biological molecules than has yet been seen on any iOS device.

::DEVELOPER

Helen Ginn

:: SCREENSHOTS

CMol

:: REQUIREMENTS

  • iPad / iPhone / iPod touch

:: DOWNLOAD

 CMol

:: MORE INFORMATION

Molecule Viewer 3D 1.2.5 – 3D Molecular Viewer for Android

Molecule Viewer 3D 1.2.5

:: DESCRIPTION

Molecule Viewer 3D opens the most common 3D molecule file formats saved on your SD card or choose from one of the 243 included molecules in the molecule library.

::DEVELOPER

Adam Hogan (purplepanzer1@gmail.com)

:: SCREENSHOTS

moleculeviewer

:: REQUIREMENTS

  • Android

:: DOWNLOAD

 Molecule Viewer 3D

:: MORE INFORMATION

Atomdroid 1.5.0 – Molecular Viewer/Builder for Android

Atomdroid 1.5.0

:: DESCRIPTION

Atomdroid can be used as a molecular viewer/builder but also gives the opportunity to carry out small calculations using the UFF force field (in accordance to the Open Babel implementation).

::DEVELOPER

The “Computational Chemistry and Biochemistry” (CCB) group

:: SCREENSHOTS

Atomdroid

:: REQUIREMENTS

  • Android

:: DOWNLOAD

 Atomdroid

:: MORE INFORMATION

Citation

Atomdroid: A computational chemistry tool for mobile platforms
J. Feldt, R. A. Mata and J. M. Dieterich
J. Chem. Inf. Model. 52, 1072-1078 (2012)

GLmol 0.47 – Molecular Viewer on WebGL/Javascript

GLmol 0.47

:: DESCRIPTION

GLmol is a 3D molecular viewer based on WebGL and Javascript. You can embed molecular models in Web pages without using Java or plugins.

::DEVELOPER

biochem_fan@users.sourceforge.jp

:: SCREENSHOTS

GLmol

:: REQUIREMENTS

  • Web Browser supported WebGL

:: DOWNLOAD

 GLmol

:: MORE INFORMATION

MCDL 20070701 – Java Molecular Viewer/Editor for Chemical Structures

MCDL 20070701

:: DESCRIPTION

MCDL (Modular Chemical Descriptor Language) is a small Java molecular viewer/editor for chemical structures, stored in Modular Chemical Descriptor Language linear notation.  The editor supports the MCDL format, in which structures are presented in compact canonical form and is capable of restoring bond orders as well as of managing atom and bond drawing overlap. A small database of cage and large cyclic fragment is used for optimal representation of difficult-to-draw molecules. The improved algorithm of the structure diagram generation can be used for other chemical notations that lack atomic coordinates (SMILES, InChI).

::DEVELOPER

Sergei Trepalin (Institute of Physiologically Active Compounds RAS)

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Linux / Mac OsX
  • Java

:: DOWNLOAD

MCDL

:: MORE INFORMATION

Citation:

Molecules 2006, 11(4), 219-231; doi:10.3390/11040219
A Java Chemical Structure Editor Supporting the Modular Chemical Descriptor Language (MCDL)
Sergei V. Trepalin, Alexander V. Yarkov , Igor V. Pletnev and Andrei A. Gakh