:: DESCRIPTION
PWKmeans penalized and weighted K-means extends the target function of K-means.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
George C. Tseng. (2007).
Penalized and weighted K-means for clustering with scattered objects and prior information in high-throughput biological data.
Bioinformatics. 23:2247-2255.
:: DESCRIPTION
SeSAW (sequence-derived structural alignment weights) is a web-based program for identifying functionally or evolutionarily conserved motifs in protein structures by locating sequence and structural similarities, and quantifying these at the level of individual residues. Results can be visualized in 2D, as annotated alignments, or in 3D, as structural superpositions. An example is given for both an experimentally determined query structure and a homology model.
::DEVELOPER
Department of Genome Informatics; Research Institute for Microbial Diseases; Osaka University
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
SeSAW: balancing sequence and structural information in protein functional mapping.
Standley DM, Yamashita R, Kinjo AR, Toh H, Nakamura H.
Bioinformatics. 2010 May 1;26(9):1258-9. Epub 2010 Mar 17.
:: DESCRIPTION
Weighbor is a fast, accurate, and essentially un-biased alternative method for constructing evolutionary trees from a sequence-derived distance matrix.
::DEVELOPER
William J. Bruno, Nicholas D. Socci, and Aaron L. Halpern.
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
William J. Bruno, Nicholas D. Socci, and Aaron L. Halpern
Weighted Neighbor Joining: A Likelihood-Based Approach to Distance-Based Phylogeny Reconstruction,
Mol. Biol. Evol. 17 (1): 189-197 (2000)