MJOIN 1.2 – Neighbor Joining with Subtree Weights

MJOIN 1.2

:: DESCRIPTION

MJOIN is a neighbor-joining algorithm for reconstructing trees from subtree weights, instead of from distances.

::DEVELOPER

Laboratory for Mathematical and Computational Biology  , UC Berkeley

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 MJOIN

:: MORE INFORMATION

Citation

Dan Levy, Ruriko Yoshida and Lior Pachter
Beyond pairwise distances: neighbor joining with phylogenetic diversity estimates
Molecular Biology and Evolution, Advanced Access, November 9, 2005.

Weighbor 1.2 – Weighted Neighbor Joining

Weighbor 1.2

:: DESCRIPTION

Weighbor is a fast, accurate, and essentially un-biased alternative method for constructing evolutionary trees from a sequence-derived distance matrix.

::DEVELOPER

William J. Bruno, Nicholas D. Socci, and Aaron L. Halpern.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 Weighbor

:: MORE INFORMATION

Citation:

William J. Bruno, Nicholas D. Socci, and Aaron L. Halpern
Weighted Neighbor Joining: A Likelihood-Based Approach to Distance-Based Phylogeny Reconstruction,
Mol. Biol. Evol. 17 (1): 189-197 (2000)