:: DESCRIPTION
The NetUTR method presented here performs 2-3-fold better compared with NetGene2 and GenScan in 5′ UTRs (5′ untranslated regions).
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
Analysis and recognition of 5′ UTR intron splice sites in human pre-mRNA.
Eden E, Brunak S.
Nucleic Acids Res. 2004 Feb 11;32(3):1131-42.
:: DESCRIPTION
ANM (Anisotropic network model) is a simple NMA tool for analysis of vibrational motions in molecular systems. It uses Elastic Network (EN) methodology and represents the system in the residue level.
aANM (adaptive anisotropic network mode) is a new methodl for exploring functional transitions.
::DEVELOPER
Department of Computational and Systems Biology , University of Pittsburgh
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
The anisotropic network model web server at 2015 (ANM 2.0).
Eyal E, Lum G, Bahar I.
Bioinformatics. 2015 Jan 6. pii: btu847.
Yang Z, Májek P, Bahar I, 2009
Allosteric Transitions of Supramolecular Systems Explored by Network Models: Application to Chaperonin GroEL.
PLoS Comput Biol 5(4): e1000360. doi:10.1371/journal.pcbi.1000360 (2009)
:: DESCRIPTION
WebPropagate is a web-server that implements variants of network propagation on up-to-date PPI networks. Starting from a seed set of proteins that are known to be associated with a process of interest, WebPropagate outputs additional candidate proteins that are significantly associated with the seed set.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
WebPropagate: A Web Server for Network Propagation.
Biran H, Almozlino T, Kupiec M, Sharan R.
J Mol Biol. 2018 Jul 20;430(15):2231-2236. doi: 10.1016/j.jmb.2018.02.025.
:: DESCRIPTION
BNW is a comprehensive web server for Bayesian network modeling of biological data sets. It is designed so that users can quickly and seamlessly upload a dataset, learn the structure of the network model that best explains the data, and use the model to understand and make predictions about relationships between the variables in the model.
::DEVELOPER
Yan Cui’s Lab at University of Tennessee Health Science Center
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Bioinformatics. 2013 Nov 1;29(21):2801-3. doi: 10.1093/bioinformatics/btt472. Epub 2013 Aug 21.
Bayesian Network Webserver: a comprehensive tool for biological network modeling.
Ziebarth JD1, Bhattacharya A, Cui Y.
:: DESCRIPTION
GWAB (genome-wide Association Boosting) is a web server for the network-based boosting of human GWAS data.
::DEVELOPER
Network Biomedicine Laboratory at Yonsei University, Korea
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
Nucleic Acids Res. 2017 Jul 3;45(W1):W154-W161. doi: 10.1093/nar/gkx284.
GWAB: a web server for the network-based boosting of human genome-wide association data.
Shim JE, Bang C, Yang S, Lee T, Hwang S, Kim CY, Singh-Blom UM, Marcotte EM, Lee I.
:: DESCRIPTION
ASEB (Acetylation Set Enrichment-Based) is a method to predict the KAT families responsible for a given protein.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
ASEB: a web server for KAT-specific acetylation site prediction.
Wang L, Du Y, Lu M, Li T.
Nucleic Acids Res. 2012 Jul;40(Web Server issue):W376-9. doi: 10.1093/nar/gks437.
:: DESCRIPTION
MEDock (Maximum-Entropy based Docking) is a maximum-entropy based docking web server for efficient prediction of ligand binding sites
::DEVELOPER
Molecular Biomedical Informatics
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
MEDock: a web server for efficient prediction of ligand binding sites based on a novel optimization algorithm.
Chang DT, Oyang YJ, Lin JH.
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W233-8.
:: DESCRIPTION
AutoGRAPH is an integrated web server for multi-species comparative genomic analysis. It is designed for constructing and visualizing synteny maps between two or three species, determination and display of macrosynteny and microsynteny relationships among species, and for highlighting evolutionary breakpoints.
::DEVELOPER
CANINE GENETICS RESEARCH PROJECTS
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
AutoGRAPH: an interactive web server for automating and visualizing comparative genome maps.
Derrien T, André C, Galibert F, Hitte C.
Bioinformatics. 2007 Feb 15;23(4):498-9. Epub 2006 Dec 4.
:: DESCRIPTION
PEAKS can be used to identify significant motif positional biases in DNA sequences.
::DEVELOPER
Nicolás Bellora and Mar Albà, Evolutionary Genomics Group (IMIM-UPF, Barcelona).
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
No
:: MORE INFORMATION
Citation
Bellora, N., Farré, D., and Albà, M.M. (2006)
PEAKS: Identification of regulatory motifs by their position in DNA sequences.
Bioinformatics. 2006 Nov 10;
:: DESCRIPTION
The BTW (Boltzmann Time Warping) web server allows a user to upload two tab-separated text files A,B of gene expression data, each possibly having a different number of time intervals of different durations. BTW then computes time warping distance between each gene of A with each gene of B, using a recently developed symmetric algorithm which additionally computes the Boltzmann partition function and outputs Boltzmann pair probabilities.
:: DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W482-5.
BTW: a web server for Boltzmann time warping of gene expression time series.
Ferrè F, Clote P.