:: DESCRIPTION
PathWhiz is a web server designed for the creation of colourful, visually pleasing, and biologically accurate pathway diagrams that are machine-readable and interactive.
::DEVELOPER
the Wishart Research Group, University of Alberta
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
Pathways with PathWhiz.
Pon A, Jewison T, Su Y, Liang Y, Knox C, Maciejewski A, Wilson M, Wishart DS.
Nucleic Acids Res. 2015 May 1. pii: gkv399
:: DESCRIPTION
RNA-Redesign utilizes fixed-backbone design to optimize the primary sequence of a RNA to match a desired backbone, in analogy to fundamental tools that have driven major advances in protein engineering.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
RNA-Redesign: a web server for fixed-backbone 3D design of RNA.
Yesselman JD, Das R.
Nucleic Acids Res. 2015 May 11. pii: gkv465.
:: DESCRIPTION
MetExplore is a web server to link metabolomic experiments and genome-scale metabolic networks.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
Nucleic Acids Res. 2010 Jul;38(Web Server issue):W132-7. doi: 10.1093/nar/gkq312. Epub 2010 May 5.
MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks.
Cottret L, Wildridge D, Vinson F, Barrett MP, Charles H, Sagot MF, Jourdan F.
:: DESCRIPTION
SequenceServer lets you rapidly set up a BLAST+ server with an intuitive user interface for use locally or over the web.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Sequenceserver: a modern graphical user interface for custom BLAST databases
Anurag Priyam, Ben J Woodcroft, Vivek Rai, Alekhya Munagala, Ismail Moghul, Filip Ter, Mark Anthony Gibbins, HongKee Moon, Guy Leonard, Wolfgang Rumpf, Yannick Wurm
doi: http://dx.doi.org/10.1101/033142
:: DESCRIPTION
myPhyloDB is an open-source software package aimed at developing a user-friendly web-interface for accessing and analyzing all of your laboratory’s microbial ecology data.
::DEVELOPER
: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
myPhyloDB: a local web server for the storage and analysis of metagenomic data.
Manter DK, Korsa M, Tebbe C, Delgado JA.
Database (Oxford). 2016 Mar 28;2016. pii: baw037. doi: 10.1093/database/baw037.
:: DESCRIPTION
miRQuest is a webserver that enables to the end-user a friendly and standardized software to use the many ab initio tools for miRNA investigation.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
miRQuest: integration of tools on a Web server for microRNA research.
Aguiar RR, Ambrosio LA, Sepúlveda-Hermosilla G, Maracaja-Coutinho V, Paschoal AR.
Genet Mol Res. 2016 Mar 28;15(1). doi: 10.4238/gmr.15016861.
:: DESCRIPTION
DelphiForce is a DelPhi-based script allowing to calculate electrostatic force between two objects, such as proteins, DNAs, lipids, small molecules, etc.
::DEVELOPER
:: SCREENSHOTS
N/a
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
Li L, Jia Z, Peng Y, Chakravorty A, Sun L, Alexov E.
DelPhiForce web server: electrostatic forces and energy calculations and visualization.
Bioinformatics. 2017 Nov 15;33(22):3661-3663. doi: 10.1093/bioinformatics/btx495. PMID: 29036596; PMCID: PMC5870670.
:: DESCRIPTION
PepPSy has been developed as a user-friendly gene expression-based prioritization system, to help investigators to determine in which human tissues they should look for an unseen protein and curators to quickly look at available transcriptomics/proteomics data for a list of proteins.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
PepPSy: a web server to prioritize gene products in experimental and biocuration workflows.
Sallou O, Duek PD, Darde TA, Collin O, Lane L, Chalmel F.
Database (Oxford). 2016 May 12;2016. pii: baw070.
:: DESCRIPTION
GsmPlot is a web service to automatically download, analyze and visualize epigenetics data (ChIP-Seq, ATAC-Seq, Bis-Seq), public from NCBI or private from you.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation:
BMC Bioinformatics, 21 (1), 55 2020 Feb 12
GsmPlot: A Web Server to Visualize Epigenome Data in NCBI
Jia Li , Yue Yin , Mutian Zhang , Jie Cui , Zhenhai Zhang , Zhiyong Zhang , Deqiang Sun
:: DESCRIPTION
The Bipad Server is a web interface to predict sequence elements embedded within unaligned sequences. Either a bipartite model, consisting of a pair of one-block position weight matrices (PWM’s) with a gap distribution, or a single PWM matrix for contiguous single block motifs may be produced. The Bipad program performs multiple local alignment by entropy minimization and cyclic refinement using a stochastic greedy search strategy. The best models are refined by maximizing incremental information contents among a set of potential models with varying half site and gap lengths.
::DEVELOPER
Dr. Chengpeng Bi (send comments to: cbi at cmh dot edu)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
Contact: Dr. Stephen ONeil (send request to: soneil at cmh dot edu)
:: MORE INFORMATION
Citation
BMC Bioinformatics 2006, 7:76
BIPAD: A web server for modeling bipartite sequence elements
Chengpeng Bi and Peter K Rogan