genoPlotR 0.8.11 – Plot Gene and Genome Maps

genoPlotR 0.8.11

:: DESCRIPTION

genoPlotR is a package for the R statistical environment that enables one to load genome alignments and comparisons along with genome annotation to create plots and diagrams of genome comparisons

::DEVELOPER

Lionel Guy (lionel.guy at ebc.uu.se), Jens Roat Kultima

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 genoPlotR

:: MORE INFORMATION

Citation:

Lionel Guy, Jens Roat Kultima, and Siv G. E. Andersson:
genoPlotR: comparative gene and genome visualization in R.
Bioinformatics 2010;26(18):2334-2335

AutoGRAPH – Web Server for Automating and Visualizing Comparative Genome Maps

AutoGRAPH

:: DESCRIPTION

AutoGRAPH is an integrated web server for multi-species comparative genomic analysis. It is designed for constructing and visualizing synteny maps between two or three species, determination and display of macrosynteny and microsynteny relationships among species, and for highlighting evolutionary breakpoints.

::DEVELOPER

CANINE GENETICS RESEARCH PROJECTS

:: SCREENSHOTS

AutoGRAPH

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

  NO

:: MORE INFORMATION

Citation

AutoGRAPH: an interactive web server for automating and visualizing comparative genome maps.
Derrien T, André C, Galibert F, Hitte C.
Bioinformatics. 2007 Feb 15;23(4):498-9. Epub 2006 Dec 4.

Grid Map 3.0a-beta – Displays Genome Mapping Data in a Grid Format

Grid Map 3.0a-beta

:: DESCRIPTION

Grid Map was designed to display comparative genome mapping data in a grid format. It is a generic Java version of the Oxford Grid display (written for the ACEDB database software package), but can be used to display many kinds of gridded data.

::DEVELOPER

 DICKS COMPUTATIONAL BIOLOGY GROUP

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows/ Linux / Mac OsX
  • JAVA

:: DOWNLOAD

  Grid Map

:: MORE INFORMATION

GMV 1.0c-beta – Genome Map Viewer

GMV 1.0c-beta

:: DESCRIPTION

GMV (Genome Map Viewer) is a tool that compares gene order in two or more genomes and displays the results in the form of the concentric ring display of Moore et al.(1995) and Gale and Devos (1998). This display shows the relative positions of linkage blocks in a set of species, where these blocks have been proposed on the basis of conservation of gene order across the species being examined. In cereals these blocks are often based on rice.

::DEVELOPER

 DICKS COMPUTATIONAL BIOLOGY GROUP

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows/ Linux / Mac OsX
  • JAVA

:: DOWNLOAD

  GMV

:: MORE INFORMATION