WaVPeak – Determining the location of Peaks in NMR spectra

WaVPeak

:: DESCRIPTION

WaVPeak is a wavelet smoothing and volume filtering-based method for automatic peak picking in NMR spectra. The program below has three options for the denoising step: 1) wavelet denoising; 2) median-modifie-Wiener-filter (MMWF)-based denoising; and 3) MMWF*-based denoising, where MMWF* is a novel variation of MMWF.

::DEVELOPER

Structural and Functional Bioinformatics Group, King Abdullah University of Science and Technology

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • Matlab

:: DOWNLOAD

WaVPeak

:: MORE INFORMATION

Citation

WaVPeak: picking NMR peaks through wavelet-based smoothing and volume-based filtering.
Liu Z, Abbas A, Jing BY, Gao X.
Bioinformatics. 2012 Apr 1;28(7):914-20. doi: 10.1093/bioinformatics/bts078

PEAKS – Positional Footprinting Web Server

PEAKS

:: DESCRIPTION

PEAKS can be used to identify significant motif positional biases in DNA sequences.

::DEVELOPER

Nicolás Bellora and Mar AlbàEvolutionary Genomics Group (IMIM-UPF, Barcelona).

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

  No

:: MORE INFORMATION

Citation

Bellora, N., Farré, D., and Albà, M.M. (2006)
PEAKS: Identification of regulatory motifs by their position in DNA sequences.
Bioinformatics. 2006 Nov 10;