:: DESCRIPTION
STS implements a prototype of online phylogenetics, updating a posterior distribution generated by MrBayes with new sequences.
::DEVELOPER
SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Claywell BC, Dinh V, Fourment M, McCoy CO, Matsen Iv FA.
A Surrogate Function for One-Dimensional Phylogenetic Likelihoods.
Mol Biol Evol. 2018 Jan 1;35(1):242-246. doi: 10.1093/molbev/msx253. PMID: 29029199; PMCID: PMC5850616.
:: DESCRIPTION
STS (Sequential Tree Sampler) is a software for phylogenetic inference program via sequential Monte Carlo.
::DEVELOPER
The Darling Lab , Erick Matsen’s group
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
STS (Suffix Tree Searcher) is a Java program for building and exploring indexes of small or large amounts of DNA data. It connects to C programs that do the heavy lifting. The indexes are actually disk-resident partitioned suffix trees, and can be constructed for single or multiple DNA sequences in very flexible ways. The input format is fasta. The output is in the form of tabular results, generally showing longest common substring (LCS) matches among the input sequences. You can also search for exact and inexact occurrences of user specified strings.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
