:: DESCRIPTION
STS implements a prototype of online phylogenetics, updating a posterior distribution generated by MrBayes with new sequences.
::DEVELOPER
SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Claywell BC, Dinh V, Fourment M, McCoy CO, Matsen Iv FA.
A Surrogate Function for One-Dimensional Phylogenetic Likelihoods.
Mol Biol Evol. 2018 Jan 1;35(1):242-246. doi: 10.1093/molbev/msx253. PMID: 29029199; PMCID: PMC5850616.
:: DESCRIPTION
G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual genome sequences.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Gronau I, Hubisz MJ, Gulko B, Danko CG, Siepel A.
Bayesian inference of ancient human demography from individual genome sequences.
Nat Genet. 2011 Sep 18;43(10):1031-4. doi: 10.1038/ng.937. PMID: 21926973; PMCID: PMC3245873.
:: DESCRIPTION
HMS (hybrid motif sampler) implements a novel computational algorithm specifically designed for transcription factor binding sites (TFBS) motif discovery using ChIP-Seq data. HMS combines stochastic sampling with determinstic greedy search to achieve rapid and accurate motif pattern identification. In addition, it can identify non-ignorable inter-position dependency inside TFBS motifs.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Hu M, Yu J, Taylor JM, Chinnaiyan AM, Qin ZS.
On the detection and refinement of transcription factor binding sites using ChIP-Seq data.
Nucleic Acids Res. 2010 Apr;38(7):2154-67. Epub 2010 Jan 6.
:: DESCRIPTION
fcsampling (Functionally-constrained sampling), sampler, is a program to generate function-constrained samples that match a target distribution.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Syst Biol. 2013 Jan 16;7:5. doi: 10.1186/1752-0509-7-5.
Disentangling function from topology to infer the network properties of disease genes.
Ghersi D1, Singh M.
