FaBox 1.61 – Online FASTA Sequences Toolbox

FaBox 1.61

:: DESCRIPTION

FaBox is a collection of simple and intuitive web services that enable biologists and medical researchers to quickly perform typical task with sequence data. The services makes it easy to extract, edit, and replace sequence headers and join or divide data sets based on header information. Other services include collapsing a set of sequences into haplotypes and automated formatting of input files for a number of population genetics programs, such as ARLEQUIN , TCS and MRBAYES . The toolbox is expected to grow on the basis of requests for particular services and converters in the future.

::DEVELOPER

Palle Villesen Fredsted

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/Windows/MacOsX
  • WebServer
  • PHP

:: DOWNLOAD

 FaBox

:: MORE INFORMATION

Citation

Villesen, P (2007),
FaBox: an online toolbox for fasta sequences,
Molecular Ecology Notes 7 (6), 965-968. doi:10.1111/j.1471-8286.2007.01821.x

STS v0.1 – Sequential Tree Sampler for online Phylogenetics

STS v0.1

:: DESCRIPTION

STS implements a prototype of online phylogenetics, updating a posterior distribution generated by MrBayes with new sequences.

::DEVELOPER

Mathieu Fourment

 SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

STS

:: MORE INFORMATION

Citation

Claywell BC, Dinh V, Fourment M, McCoy CO, Matsen Iv FA.
A Surrogate Function for One-Dimensional Phylogenetic Likelihoods.
Mol Biol Evol. 2018 Jan 1;35(1):242-246. doi: 10.1093/molbev/msx253. PMID: 29029199; PMCID: PMC5850616.

TilingScan – Analyze Tiling Array results online

TilingScan

:: DESCRIPTION

TilingScan is an application for the identification of differentially expressed DNA regions in Tiling Microarray data.

::DEVELOPER

TilingScan team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  •  Web browser

:: DOWNLOAD

TilingScan 

:: MORE INFORMATION

Citation

A web application for the unspecific detection of differentially expressed DNA regions in strand specific expression data.
Juanes JM, Miguel A, Morales LJ, Pérez-Ortín JE, Arnau V.
Bioinformatics. 2015 Jun 2. pii: btv343.