:: DESCRIPTION
DBRandomizer randomizes DNA and protein databases in different ways(Markov Chain DB, Shuffle DB, Reverse DB).
:: DEVELOPER
AgBase, Department of Basic Science,College of Veterinary Medicine, Mississippi State University
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
CUDASW++ (compute unified device architecture) is a bioinformatics software for Smith-Waterman protein database searches that takes advantage of the massively parallel CUDA architecture of NVIDIA Tesla GPUs to perform sequence searches 10x-50x faster than NCBI BLAST.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Yongchao Liu, Bertil Schmidt, Douglas L. Maskell:
“CUDASW++2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions“.
BMC Research Notes, 2010, 3:93
:: DESCRIPTION
CD-HIT is a very widely used program for clustering and comparing protein or nucleotide sequences.CD-HIT is very fast and can handle extremely large databases. CD-HIT helps to significantly reduce the computational and manual efforts in many sequence analysis tasks and aids in understanding the data structure and correct the bias within a dataset.
::DEVELOPER
Group of Weizhong Li , Godzik Lab
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: MORE INFORMATION
Citation:
Ying Huang, Beifang Niu, Ying Gao, Limin Fu and Weizhong Li.
CD-HIT Suite: a web server for clustering and comparing biological sequences.
Bioinformatics, 2010(26): 680-682
