:: DESCRIPTION
Pfam is a large collection of multiple sequence alignments and hidden Markov models covering many common protein domains.
:: DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
NO
:: MORE INFORMATION
Citation
Nucleic Acids Res. 2019 Jan 8;47(D1):D427-D432. doi: 10.1093/nar/gky995.
The Pfam protein families database in 2019.
El-Gebali S et al.
:: DESCRIPTION
ArchSchema is a java program that generates dynamic plots of related Pfam domain architectures. The protein sequences having each architecture can be displayed on the plot and separately listed. Where there is 3D structural information in the PDB, the relevant PDB codes can be shown on the plot. Sequences can be be filtered by organism, or the output can be limited to just those protein sequences for which there is structural information in the PDB.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Bioinformatics. 2010 May 1;26(9):1260-1. Epub 2010 Mar 17.
ArchSchema: a tool for interactive graphing of related Pfam domain architectures.
Tamuri AU, Laskowski RA.
:: DESCRIPTION
STORM (Systematic Tailored Orf-data Retrieval & Management) combines protein analyses of BLAST, FASTA, Pfam and ProtParam on a batch-file of protein sequences. It subsequently summarizes and organizes the output in an Access database format.More specifically, STORM extracts protein sequences after ORF prediction and subsequently performs an automatic analysis for each of the proteins. This analysis consists of web-based similarity searches (BLASTp and FASTA) as well as Pfam predictions and Protparam calculations of protein physicochemical properties.
::DEVELOPER
Laboratory of Gene Technology, Katholieke Universiteit Leuven
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Lavigne, R., Sun, W.D. and Volckaert, G.
STORM towards protein function: Systematic Tailored ORF-data Retrieval and Managment.
Applied Bioinformatics (2003) 2(3): 177-179