GNAT 1.22 – Gene / Protein Named Entity Recognition and Normalization software

GNAT 1.22

:: DESCRIPTION

GNAT (Gene Name Normalization) is a library and web service capable of performing gene entity NER and normalization of biomedical articles. Mentions of genes and proteins in the articles are linked to to Entrez Gene identifiers.

::DEVELOPER

the Bergman lab.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / Windows / MacOsX
Java

:: DOWNLOAD

GNAT

:: MORE INFORMATION

Citation

Hakenberg et al. (2011)
The GNAT library for local and remote gene mention normalization
Bioinformatics (2011) 27 (19): 2769-2771.

TAXNAMECONVERT 2.4 – Rename Sequence and Taxon names in Tree and Sequence files

TAXNAMECONVERT 2.4

:: DESCRIPTION

Taxnameconvert is a commandline software that takes as input a file with a name table and usually a Newick formatted tree file or fasta sequence/alignment file, but can also be used to exchange names in many other text file formats.

::DEVELOPER

the Center of Integrative Bioinformatics Vienna (CIBIV) headed by Arndt von Haeseler.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / WIndows /MacOsX
Perl

:: DOWNLOAD

Taxnameconvert

:: MORE INFORMATION