GenomeSlicer 1.1 – Extracts Relevant Sub-sequences from Fasta or Genbank format Sequence Files

GenomeSlicer 1.1

:: DESCRIPTION

GenomeSlicer is a graphical tool for Microsoft Windows which extracts relevant sub-sequences from Fasta or Genbank format sequence files. GenomeSlicer can return targeted coding sequences (genes), variable regions upstream or downstream of genes, as well as sub-sequences specified by a given 5′ coordinate and 3′ coordinate. GenomeSlicer can generate output in both multi-fasta and spreadsheet formats.

::DEVELOPER

Elliot Nierman (enierman@gmail.com) at The Institute For Genomic Research (TIGR)

:: SCREENSHOTS

:: REQUIREMENTS

Windows
Excel

:: DOWNLOAD

GenomeSlicer

:: MORE INFORMATION

iConvert.pl – Convert Tree Files and Sequence Files between common Formats

iConvert.pl

:: DESCRIPTION

iConvert.pl: Perl script converting tree files and sequence files between common formats . This program supports FASTA, PIR, Clustal and Nexus sequence files and Phylip, Nexus, Clustal tree files.

::DEVELOPER

Mathieu Fourment

SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / Windows / MacOsX
Perl

:: DOWNLOAD

iConvert.pl

:: MORE INFORMATION

TAXNAMECONVERT 2.4 – Rename Sequence and Taxon names in Tree and Sequence files

TAXNAMECONVERT 2.4

:: DESCRIPTION

Taxnameconvert is a commandline software that takes as input a file with a name table and usually a Newick formatted tree file or fasta sequence/alignment file, but can also be used to exchange names in many other text file formats.

::DEVELOPER

the Center of Integrative Bioinformatics Vienna (CIBIV) headed by Arndt von Haeseler.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / WIndows /MacOsX
Perl

:: DOWNLOAD

Taxnameconvert

:: MORE INFORMATION