Tag: GNAT

GNAT 20131101 – Glycosylation Network Analysis Toolbox

GNAT 20131101

:: DESCRIPTION

GNAT is an open source MATLAB-based toolbox. It provides functions for reading, writing, manipulation, visualization and simulation of glycan structures and glycosylation reaction networks.

::DEVELOPER

Sriram Neelamegham 

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux /MacOsX
  • Matlab

:: DOWNLOAD

 GNAT

:: MORE INFORMATION

Citation

Bioinformatics. 2013 Feb 1;29(3):404-6. doi: 10.1093/bioinformatics/bts703. Epub 2012 Dec 10.
Glycosylation Network Analysis Toolbox: a MATLAB-based environment for systems glycobiology.
Liu G, Puri A, Neelamegham S.

GNAT 1.22 – Gene / Protein Named Entity Recognition and Normalization software

GNAT 1.22

:: DESCRIPTION

GNAT (Gene Name Normalization) is a library and web service capable of performing gene entity NER and normalization of biomedical articles. Mentions of genes and proteins in the articles are linked to to Entrez Gene identifiers.

::DEVELOPER

the Bergman lab.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • Java

:: DOWNLOAD

 GNAT

:: MORE INFORMATION

Citation

Hakenberg et al. (2011)
The GNAT library for local and remote gene mention normalization
Bioinformatics (2011) 27 (19): 2769-2771.