:: DESCRIPTION
JAMP (Joint Genetic Association of Multiple Phenotypes) uses raw data as input and evaluates the multivariate evidence for association of multiple phenotypes for a SNP. It also provides a family-wise corrected P-value.
::DEVELOPER
CTG (Complex Traits Genetics) Lab
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
The R package MultiMeta provides an implementation of the inverse-variance based method for meta-analysis, generalized to an n-dimensional setting.
::DEVELOPER
Dragana Vuckovic <dragana.vuckovic at burlo.trieste.it>
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
MultiMeta: an R package for meta-analyzing multi-phenotype genome-wide association studies.
Vuckovic D, Gasparini P, Soranzo N, Iotchkova V.
Bioinformatics. 2015 Apr 22. pii: btv222
:: DESCRIPTION
LKM / LFKM / MFKM is an R package of gene based kernel machine regression for quantitative traits in longitudinal (Multivariate) (Family) Data.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: MORE INFORMATION
Citation
Yan Q, Weeks DE, Tiwari HK, Yi N, Zhang K, Gao G, Lin WY, Lou XY, Chen W, Liu N.
Rare-Variant Kernel Machine Test for Longitudinal Data from Population and Family Samples.
Hum Hered. 2015;80(3):126-38. doi: 10.1159/000445057. Epub 2016 Apr 29. PMID: 27161037; PMCID: PMC4940283.
Yan Q, Weeks DE, Celedón JC, Tiwari HK, Li B, Wang X, Lin WY, Lou XY, Gao G, Chen W, Liu N.
Associating Multivariate Quantitative Phenotypes with Genetic Variants in Family Samples with a Novel Kernel Machine Regression Method.
Genetics. 2015 Dec;201(4):1329-39. doi: 10.1534/genetics.115.178590. Epub 2015 Oct 19. PMID: 26482791; PMCID: PMC4676518.
:: DESCRIPTION
The jointSeg R package implements functions to quickly segment multivariate signals into piecewise constant profiles. A typical application is the joint segmentation of total DNA copy numbers and allelic ratios obtained from Single Nucleotide Polymorphism (SNP) microarrays in cancer studies.
::DEVELOPER
Laboratoire de Mathématiques et Modélisation d’Évry
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Brief Bioinform. 2014 Sep 8. pii: bbu026.
Performance evaluation of DNA copy number segmentation methods.
Pierre-Jean M, Rigaill G, Neuvial P.
:: DESCRIPTION
Igloo-Plot is a tool for efficient visualization of multidimensional datasets.
Web-Igloo visualizes multivariate data in a 2D chart of multiple quantitative variables represented as anchors on a semicircle.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Kuntal BK, Ghosh TS, Mande SS.
Igloo-Plot: a tool for visualization of multidimensional datasets.
Genomics. 2014 Jan;103(1):11-20. doi: 10.1016/j.ygeno.2014.01.004. Epub 2014 Jan 17. PMID: 24444495.
Kuntal BK, Mande SS.
Web-igloo: a web based platform for multivariate data visualization.
Bioinformatics. 2017 Feb 15;33(4):615-617. doi: 10.1093/bioinformatics/btw669. PMID: 27797774.
