:: DESCRIPTION
DECOMP repairs and decomposes files from the Protein Data Bank PDB formats.
::DEVELOPER
:: SCREENSHOTS
N/a
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformation. 2009 Jul 27;3(10):413-4.
DECOMP: a PDB decomposition tool on the web.
Ordog R1, Szabadka Z, Grolmusz V.
:: DESCRIPTION
BIDCHIPS is a software for quantifying and Removing Biases in ChIP-Seq Signals
::DEVELOPER
Perkins Lab at the OHRI
:: SCREENSHOTS
N/A
::REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BIDCHIPS: bias decomposition and removal from ChIP-seq data clarifies true binding signal and its functional correlates.
Ramachandran P, Palidwor GA, Perkins TJ.
Epigenetics Chromatin. 2015 Sep 17;8:33. doi: 10.1186/s13072-015-0028-2.
:: DESCRIPTION
ADDA is an automatic algorithm for domain decomposition and clustering of all protein domain families. the authors use alignments derived from an all-on-all sequence comparison to define domains within protein sequences based on a global maximum likelihood model.
::DEVELOPER
The Institute of Biotechnology (BI) at the University of Helsinki
:: SCREENSHOTS
N/A
::REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Heger A, Holm L (2003)
Exhaustive enumeration of protein families.
J Mol Biol 328(3):749-67.
:: DESCRIPTION
Igloo-Plot is a tool for efficient visualization of multidimensional datasets.
Web-Igloo visualizes multivariate data in a 2D chart of multiple quantitative variables represented as anchors on a semicircle.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Kuntal BK, Ghosh TS, Mande SS.
Igloo-Plot: a tool for visualization of multidimensional datasets.
Genomics. 2014 Jan;103(1):11-20. doi: 10.1016/j.ygeno.2014.01.004. Epub 2014 Jan 17. PMID: 24444495.
Kuntal BK, Mande SS.
Web-igloo: a web based platform for multivariate data visualization.
Bioinformatics. 2017 Feb 15;33(4):615-617. doi: 10.1093/bioinformatics/btw669. PMID: 27797774.
:: DESCRIPTION
Autoosc is a Mathematica package for analyzing time-series of oscillatory signals, particularly those originating from biological/chemical systems.
::DEVELOPER
Service de Biomodélisation, Bioinformatique et Bioprocédés (3BIO)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Automated analysis of biological oscillator models using mode decomposition.
Konopka T.
Bioinformatics. 2011 Apr 1;27(7):961-7. doi: 10.1093/bioinformatics/btr069
:: DESCRIPTION
Catfish implements an efficient heuristic to decompose a given flow into a set of minimum number of paths.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Theory and A Heuristic for the Minimum Path Flow Decomposition Problem.
Shao M, Kingsford C.
IEEE/ACM Trans Comput Biol Bioinform. 2019 Mar-Apr;16(2):658-670. doi: 10.1109/TCBB.2017.2779509
:: DESCRIPTION
Spresso (Speedy PRE-Screening method with Segmented cOmpounds) is a novel structure-based virtual screening method based on compound decomposition.
::DEVELOPER
Akiyama Laboratory, Tokyo Institute of Technology
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: MORE INFORMATION
Citation
Bioinformatics. 2017 Dec 1;33(23):3836-3843. doi: 10.1093/bioinformatics/btx178.
Spresso: an ultrafast compound pre-screening method based on compound decomposition.
Yanagisawa K, Komine S, Suzuki SD, Ohue M, Ishida T, Akiyama Y.
:: DESCRIPTION
SVDMAN is a program for singular value decomposition analysis of global gene expression data. It is designed to operate both as a stand-alone command line executable and as a component of larger systems for gene expression analysis.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
ME Wall, PA Dyck, TS Brettin.
SVDMAN — Singular value decomposition analysis of microarray data. 2001.
Bioinformatics 17:566-568.
