:: DESCRIPTION
DNACLUST is a tool for clustering millions of short DNA sequences. The clusters are created in such a way that the “radius” of each clusters is no more than the specified threshold.
::DEVELOPER
the Center for Bioinformatics and Computational Biology
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
BMC Bioinformatics. 2011 Jun 30;12:271.
DNACLUST: accurate and efficient clustering of phylogenetic marker genes.
Ghodsi M, Liu B, Pop M.
:: DESCRIPTION
SSAKE is a genomics application for assembling millions of very short DNA sequences.SSAKE is designed to help leverage the information from short sequence reads by stringently assembling them into contiguous sequences that can be used to characterize novel sequencing targets.
::DEVELOPER
Canada’s Michael Smith Genome Sciences Centre
: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
René L Warren, Granger G Sutton, Steven JM Jones, Robert A Holt. 2007
Assembling millions of short DNA sequences using SSAKE.
bioinformatics. 23:500-501.
:: DESCRIPTION
MASon is a C++ library that uses high performance architectures to reduce the computing time of NGS analysis pipelines.
::DEVELOPER
the Center of Integrative Bioinformatics Vienna (CIBIV)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Rescheneder, P., von Haeseler, A., Sedlazeck, F. J.,
Mason: Million alignments in seconds,
In Proceedings of the International Conference on Bioinformatics: Models, Methods and Algorithms, 2012, Algarve, Portugal, accepted for publication
